Pmne055491.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000115.1:48118017-48129107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0083 1.8 11.1 1.4 1 23 167 189 167 189 0.97 2 30 0.00025 0.052 15.9 0.6 2 21 223 242 222 243 0.93 3 30 2e-05 0.0043 19.4 0.3 3 23 275 296 273 296 0.96 4 30 3.4 7.1e+02 2.9 0.3 2 14 316 328 315 336 0.81 5 30 0.0027 0.56 12.7 0.8 1 23 346 369 346 369 0.96 6 30 0.0018 0.38 13.2 0.1 1 23 385 407 385 407 0.96 7 30 0.00049 0.1 15.0 1.9 2 23 448 469 447 469 0.97 8 30 0.00055 0.12 14.9 3.9 2 23 510 532 510 532 0.97 9 30 0.00014 0.03 16.7 1.4 1 23 582 605 582 605 0.97 10 30 0.0083 1.7 11.1 0.2 1 23 661 683 661 683 0.97 11 30 0.04 8.4 9.0 6.3 2 23 695 716 694 716 0.96 12 30 0.097 20 7.8 2.2 2 23 728 749 727 749 0.96 13 30 0.019 3.9 10.0 1.1 1 23 759 781 759 781 0.98 14 30 0.00052 0.11 14.9 6.7 1 23 809 831 809 831 0.97 15 30 0.00077 0.16 14.4 6.5 1 23 842 864 842 864 0.98 16 30 0.0012 0.25 13.8 0.7 1 23 872 894 872 894 0.95 17 30 0.0014 0.28 13.6 0.1 2 23 914 936 913 936 0.97 18 30 1.3 2.8e+02 4.2 1.0 1 23 954 976 954 976 0.91 19 30 0.11 23 7.6 3.6 1 23 983 1005 983 1005 0.97 20 30 0.0065 1.4 11.5 3.9 2 23 1016 1038 1015 1038 0.95 21 30 0.0055 1.2 11.7 0.2 2 23 1061 1082 1060 1082 0.95 22 30 8.2 1.7e+03 1.7 5.9 2 23 1125 1147 1124 1147 0.94 23 30 0.0057 1.2 11.7 0.2 2 23 1163 1184 1162 1184 0.95 24 30 0.2 43 6.8 4.5 3 23 1192 1212 1190 1212 0.96 25 30 0.032 6.7 9.3 0.9 2 23 1223 1245 1222 1245 0.95 26 30 0.73 1.5e+02 5.0 3.2 2 23 1262 1280 1262 1280 0.88 27 30 4.1 8.6e+02 2.7 1.0 2 21 1284 1303 1284 1304 0.93 28 30 0.44 92 5.7 1.9 2 23 1353 1374 1352 1374 0.93 29 30 0.00043 0.09 15.2 0.7 2 23 1385 1407 1384 1407 0.96 30 30 2.2 4.7e+02 3.5 4.8 2 21 1445 1464 1444 1465 0.94
Sequence Information
- Coding Sequence
- ATGTCTAAAGTGCAGATATATGAAGGAGATGGACTGCCAGATAAGATATGTTCGGAGTGCATACAGAAACTCAGCAGCGCGCACATATTTAAGCAGCAGTGCGAGAGATCGGATCAGGAGCTACGACGCAACTATGTGCCGCCACCGGgtTTCAGTACCGCACCTTCCCCACCAAACAGGCAGAGCAGCGACTCGGCTTTCTCAAACAACACTGACGTATCCAGCAACAACAAGCCTACAGCTTCACCCATTGAAAGCAAGGTCACACCTAGTCGGAGCCGTAAACGCAGTCGGGAAAGCGTCGACAATGCTTCATCCAGCAGCCAGTCTCATGACTACCGACCGAGTTCCACCAAGCGAGTCGAGGAGCTCCGTACCTCACAGAAAAGGCCGAGAAGATCACAAAACGCATCTTACGTTGATTCCGATTTTGATGATAACAGCGTCTCCCATTTCTCTGTCGAAACCGACTCGGATGAGCCACTATTGAAAAGTGAACATAAGTGTAAAATCTGTGGTAAAGAATTCCTCTCAAAAATGAGCGTGCTTGCACACACCAAAGTGCATTTTAGAAAATCTCTGAAACAGAATGCATTAGTGGACATACCCAAACCGACAGTCACCAATGAGAGTACGGAAGACGCTAACGACGTCGATGATAAGCTAACGTGCGAGAAATGCGACAAGAcatttaaattgaaaataatgtTGAAGCGTCATCTAGAGACCTGTGACAAGACACCGTCAAAGTCGCCGATGAAAGAGCTACTGGTGTCGTTAGAGCCAATCGACGCGGGCCCGGCTCAGTCGAATAAAATTGACTGCGAAATGTGCACTACAAAATTTAAGACGATAGACAATTTAGAGAAGCATATGAGGGTAGTTCACGCGGCCGTcctcaatcgtaataaatacgaACAGAACGAGAACGGAAAGGTGAGCGTTCCCTGCTTCTACTGTGGACAACATTTTGACGATTACTACCTCCACGCCGCGCACTTTGAAACCTGCTCCAAAAAGGACGATTCTGTTAACTTCACTTGCCCCATATGCCAGAAGGTGATGACAAGGAAGAACTCGTACTTCATACATTTAAAAGCTATGCATTTCGAACCTCGCCTCGGCAACCGTGAAGAGGGCTCCAAACAGCCGTTTGAGTGCCGCATATGCAGTAAGAAGTTGGCATCACAAGACCAACTAATCACGCACCTTGCTGCACACATGTCTAATATAAACGATAACGAAGATGGCGCTGACGATGGCTCTCGCATGAGTCATGCAGAAGACGATACTTCGGTAACATCTAGCTACAGTAATGCGCATGTACCCAGCGGGCCATTAAAATGCAGCATGTGCGAGAAACGATTCACGTATAAGAAAGCGCTCCTGAGTCATGAACAGAGACATCTCTCCGGAGAGTTGCAGATAAAGACAGAGCCACCTGATAAGAATACGTCTAGCAGTTTGCTAAGCGAGACTTTCCGTCAGTCAGAGTCAGATTCTAGTCAGGAGGAAGGGGATGATAATACGTGCGACATTTGTGAGAAGCAGTTCTCCTATAAACGTCTCCTAATTCATCACAAACGGACCAAGCACAACATGAGCTCAGGCACCAAGCGAGCGAAAATTAACCTTAAAGATTGCACCGTCCGCTGTCTCATCTGCGACTTGGAGATGAAAGTTAGTGCAATAAATGAGCACAACCAAAAACACACATCTGTAAACATAAAGCCGAGGAATCTCTACACGTGTGCAGAATGCTCCGAGAAATTTAAGAGTTGTAGCTCGCTGGCAAATCACATCAAACTAGTGCACAGGCTGAAGCAGCCCCAGCAGCCCAAGTTAGAGGGAGCAGACTTGGCGGATTTTTGTGAAGTCGTTGTGACCAAGGCGGAACCCCTGGTGTCAAACCAGAGTCACAACGACTTTGGGATGGTTCCGTCGAATCAGGATGGCAGTCCGCTTGTTAATTTGAGCGGATTCACTTGCCCAATATGTAGTAAGCAGATGCCTACATTGATTTCGCTGAAGAGACATGTGAACTGGCATTCTAACGTTGGTAACAACATTGAGAAGAAGTTGGAGTGTTTTGTTTGCAAAGAGAAATTTAGATTCCAATGCCACTACCGGCTGCATATGCGCGAGCACTATAACGACCCCAACCTGGACCCAAAGCTGCTGACTTGCTCCATTTGCAACCGCAAGAGCAAGCATCTGCGTGCTGCTAAGGCCCATATGAACTTCCACAAGCAAACACGCTTCAAGAACAAAGACTACCAGTGTTCCATATGCAAGAGAATATTCCAGTTTAGAAAAGTCTACTTGTCGCACATGGCAATACATTATAAACGTGGCGAGAGTGTGAACACTGTTGTGGGTGTCGAGCTGCCGAATACCGCTGATAAAACGGTATTCGATGGCAAATATACCTGCCATCATTGCGGGAAAGTGTGCGATTCGGAGACCTCATTAAAGCACCATATCATTTGGCACAAATCTAAAACTTCGCTCTTTGGTGCTCGCCACGAATGTCACATTTGCCATATCCAATTCACCAATAAGAGGAGATTAGAGCTCCACATCAGAACTCATTACGAGGACGACAATGGCCCATACAAGTGTCCCATATGTGGCAAAGGGTTTATCGACGAGGATTTCCACAGGAGACATGTGAAAGGACACAATTTCGATCACCAATCACATAAGGCTAGGATCGCGAACCTCAGGAAGGATAAAGTAAAGTGCCCAATTTGTGCTCGTTTCTATCCAGACTTGGTGAAACTCATACGCCATTTAAGAAGAACGCATCCTGAGAGCAAAATGATTAAGTCCGATCCAGATGCACCTGCCCAGAATTACTTCTCGTGCAAACTGTGTGCTAAAGTATTCTTAGATGAGCGACGATTGCAGCACCATGAGGAGGCTCATTTGAGAAAGCCAGAGTTCTTTAAATGCAAATTCTGTGGCAAAAAAACTATCTCCTTGAAGAATCATAGAATTCATATTAAGGCCCACTTaacacaaaaatatattgatgAGCCCCTGAAATGTATGCATTGTGATGAAATCTTTACAAGAGGGTATGACTTGCACCATCACTTACGCGATGTGCATGATATTAATGAAACATGGATTGCTGAGAGAACGGAGAAGACTTTAAATGGACCATTGAAGGAATTGCAATGCTCAATCTGCCTTAAGATCCTTGCAAGTAAGGGCAACTTTGAACGCCATATCGACTATCACAACTCGCTAAGGTGTAATTACTGCTTTGACTACTTCAGCTCCTTGAGGTTCTTGGAGGGGCACCTTGCATTCAGCTGTGAGAAAAAGAAATTGATAGGGGACACTGAAGTGTATCCCAAAAAGGTAAAATGTCACATATGTTACAAAGCTTTCCACCTGCAAGTGAAGTTAGACTGTCATCTACGCACacagcataatatcaaagtttcTAAAGAAGCATCCGAAGGCAAGAAGGAGATTGTCTGTGATTACTGCTTCCGAGTATTTGAGAATGAGTATGCTTTGAGCACCCACAAGATTTACCATCGCACTATAGGATATTACGGCTGCTTATATTGCAATCGAAAGTTTAACACCATAACTCTGTACAAAAAACACAAGAACCATCATTTATCACAACTTAACGTCGATAACCCAACAAAATGTGAGCACTGCGATGAGAAGTTTGTTGCATTCCGAGAGATGATATATCATATGAGGGACGTCCACGGTGACAACAAAGAGTGGATTGTAATGCCTAAGGAGTCCATAGAGGAGAAGTGCCCCATTTGTAACAAAATATTCTTTAACCTCCATAAACATTTGACTTATCATGAAGAGAATAGGTGCAAAAAATGCGCGGAATATTTCTATTCACAAATTGACTTCGATAATCATCTTTGTGCCATAGAAAGCGATGAAGAAGTTGACGAGAATAATGAGAACGATTTACGACCAAAATATGAAGAGTGTGCTTTTTGCTTCAAGCCTATAACTAAGAAGAACTCGCACCGTTTGCATGATCACATACATAGAGTTTCTGGTTCGATTTCGTGCCGATTTTGCCATCTcaaatttaaaactattgatgcaTTTAATATTCATGCGTTCTCCCACCGTAGCAGGAAGTATAATAAAAAGCCGATTAAATGTCGAAAGTGTGGTGAGAAGTTTGTGCGCTATGGCCCCTTCATGAAGCACATGAAATCTGCTCATAAGTCAACTCAGAAATTACATTATAGAACCATGGTAAAGCCAGAGCTCTGTGTTGTTTGCGGCGATGAATTCCCAAATCTCCATAACCACTATCGAGCCCATTTGCAGAACCAGTGTCAATCATGTCACAAATACTTCACGTCATATAAACTATTTTCGATGCATCAGTGTGATAAAGAAGATTCTGACCCAACAAAAGTTTTCACGTGTGATAAAGATCTAGTAAATTTGATTAATGCTTACACACCTAAAGACGAGAAGGATGATGAGAAATTTTATGGGCATACTGACGATGAAGACGAAGTAGAAGAGGAACCTGAAAAAGATATTCGAGATAATGAATACACAACACAGGATGAAGAGAGTCAGAACTCATCGGATGCAAACTTACATATGATGGTCCATACGCCAATTATATCAGATGTGTTGTCGCTTTATCAAAAGAAGGAAGACAAGCAACTCGATCCTGCTaatgaagttgttaatttgtCAGATGATGACACTTTGGATGGTGAAGAAGTCGTAACTGTTATAACAATTGATGATTGA
- Protein Sequence
- MSKVQIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSTAPSPPNRQSSDSAFSNNTDVSSNNKPTASPIESKVTPSRSRKRSRESVDNASSSSQSHDYRPSSTKRVEELRTSQKRPRRSQNASYVDSDFDDNSVSHFSVETDSDEPLLKSEHKCKICGKEFLSKMSVLAHTKVHFRKSLKQNALVDIPKPTVTNESTEDANDVDDKLTCEKCDKTFKLKIMLKRHLETCDKTPSKSPMKELLVSLEPIDAGPAQSNKIDCEMCTTKFKTIDNLEKHMRVVHAAVLNRNKYEQNENGKVSVPCFYCGQHFDDYYLHAAHFETCSKKDDSVNFTCPICQKVMTRKNSYFIHLKAMHFEPRLGNREEGSKQPFECRICSKKLASQDQLITHLAAHMSNINDNEDGADDGSRMSHAEDDTSVTSSYSNAHVPSGPLKCSMCEKRFTYKKALLSHEQRHLSGELQIKTEPPDKNTSSSLLSETFRQSESDSSQEEGDDNTCDICEKQFSYKRLLIHHKRTKHNMSSGTKRAKINLKDCTVRCLICDLEMKVSAINEHNQKHTSVNIKPRNLYTCAECSEKFKSCSSLANHIKLVHRLKQPQQPKLEGADLADFCEVVVTKAEPLVSNQSHNDFGMVPSNQDGSPLVNLSGFTCPICSKQMPTLISLKRHVNWHSNVGNNIEKKLECFVCKEKFRFQCHYRLHMREHYNDPNLDPKLLTCSICNRKSKHLRAAKAHMNFHKQTRFKNKDYQCSICKRIFQFRKVYLSHMAIHYKRGESVNTVVGVELPNTADKTVFDGKYTCHHCGKVCDSETSLKHHIIWHKSKTSLFGARHECHICHIQFTNKRRLELHIRTHYEDDNGPYKCPICGKGFIDEDFHRRHVKGHNFDHQSHKARIANLRKDKVKCPICARFYPDLVKLIRHLRRTHPESKMIKSDPDAPAQNYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKAHLTQKYIDEPLKCMHCDEIFTRGYDLHHHLRDVHDINETWIAERTEKTLNGPLKELQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLIGDTEVYPKKVKCHICYKAFHLQVKLDCHLRTQHNIKVSKEASEGKKEIVCDYCFRVFENEYALSTHKIYHRTIGYYGCLYCNRKFNTITLYKKHKNHHLSQLNVDNPTKCEHCDEKFVAFREMIYHMRDVHGDNKEWIVMPKESIEEKCPICNKIFFNLHKHLTYHEENRCKKCAEYFYSQIDFDNHLCAIESDEEVDENNENDLRPKYEECAFCFKPITKKNSHRLHDHIHRVSGSISCRFCHLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVRYGPFMKHMKSAHKSTQKLHYRTMVKPELCVVCGDEFPNLHNHYRAHLQNQCQSCHKYFTSYKLFSMHQCDKEDSDPTKVFTCDKDLVNLINAYTPKDEKDDEKFYGHTDDEDEVEEEPEKDIRDNEYTTQDEESQNSSDANLHMMVHTPIISDVLSLYQKKEDKQLDPANEVVNLSDDDTLDGEEVVTVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155691; iTF_01154417; iTF_01159890;
- 90% Identity
- iTF_01155691; iTF_01159890; iTF_01154417;
- 80% Identity
- -