Pgla002478.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000001.1:50927245-50945397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0072 1.6 11.1 1.4 1 23 170 192 170 192 0.97 2 30 0.00021 0.048 15.9 0.6 2 21 226 245 225 246 0.93 3 30 5.8e-06 0.0013 20.9 0.4 3 23 278 299 276 299 0.96 4 30 2.9 6.7e+02 2.9 0.3 2 14 319 331 318 339 0.81 5 30 0.0042 0.95 11.9 0.8 1 23 349 372 349 372 0.96 6 30 0.0016 0.36 13.2 0.1 1 23 388 410 388 410 0.96 7 30 0.00042 0.096 15.0 1.9 2 23 451 472 450 472 0.97 8 30 0.00047 0.11 14.9 3.9 2 23 513 535 513 535 0.97 9 30 0.00012 0.028 16.7 1.4 1 23 585 608 585 608 0.97 10 30 0.0071 1.6 11.1 0.2 1 23 664 686 664 686 0.97 11 30 0.034 7.9 9.0 6.3 2 23 698 719 697 719 0.96 12 30 0.083 19 7.8 2.2 2 23 731 752 730 752 0.96 13 30 0.016 3.7 10.0 1.1 1 23 762 784 762 784 0.98 14 30 0.00045 0.1 14.9 6.7 1 23 812 834 812 834 0.97 15 30 0.00066 0.15 14.4 6.5 1 23 845 867 845 867 0.98 16 30 0.001 0.23 13.8 0.7 1 23 875 897 875 897 0.95 17 30 0.0012 0.27 13.6 0.1 2 23 917 939 916 939 0.97 18 30 1.1 2.6e+02 4.2 1.0 1 23 957 979 957 979 0.91 19 30 0.095 22 7.6 3.6 1 23 986 1008 986 1008 0.97 20 30 0.0056 1.3 11.5 3.9 2 23 1019 1041 1018 1041 0.95 21 30 0.0047 1.1 11.7 0.2 2 23 1064 1085 1063 1085 0.95 22 30 7 1.6e+03 1.7 5.9 2 23 1128 1150 1127 1150 0.94 23 30 0.0049 1.1 11.7 0.2 2 23 1166 1187 1165 1187 0.95 24 30 0.17 40 6.8 4.5 3 23 1195 1215 1193 1215 0.96 25 30 0.028 6.3 9.3 0.9 2 23 1226 1248 1225 1248 0.95 26 30 0.63 1.4e+02 5.0 3.2 2 23 1265 1283 1265 1283 0.88 27 30 3.5 8e+02 2.7 1.0 2 21 1287 1306 1287 1307 0.93 28 30 0.37 86 5.7 1.9 2 23 1356 1377 1355 1377 0.93 29 30 0.00037 0.085 15.2 0.7 2 23 1388 1410 1387 1410 0.96 30 30 1.9 4.3e+02 3.5 4.8 2 21 1448 1467 1447 1468 0.94
Sequence Information
- Coding Sequence
- ATGGCGGACATACGACATGGTATCATATATGAAGGAGATGGACTGCCAGATAAGATATGTTCGGAGTGCATACAGAAACTTAGCAGCGCGCACATATTTAAGCAGCAGTGCGAGAGATCGGATCAGGAGCTACGACGCAACTACGTGCCGCCACCGGgttTCAGTACCGCACCTTCCCCACCAAACAGGCAGAGCAGCGACTCGGCTTTCTCAAACAATACTGACGTATCCAGCAACAACAAGCCTACAGCTTCACCCATTGAAAGCAAGGTCACACCTAGTCGGGGCCGTAAACGCAGTCGGGAGAGCGTCGACAATGCTTCATCCAGCAGCCAGTCCCATGACTACCGACCGAGTTCCACCAAGCGAGTCGAGGAGCTCCGTACCTCACAGAAAAGGCCGAGAAGATCACAAAACGCATCTTACGTTGATTCCGACTTTGATGATAACAGCGTCTCCCATTTCTCTGTCGAAACCGACTCGGATGAGCCGCTATTGAAAAGTGAACATAAGTGTAAAATCTGTGGTAAAGAATTCCTCTCAAAAATGAGCGTGCTTGCACACACCAAAGTGCATTTTAGAAAATCTCTGAAACAGAATGCATTAGTGGACATACCCAAACCGACAGTCACCAATGAGAGTATGGAAGACGCTAACGACGTCGATGATAAGCTAACGTGCGAGAAATGCGACAAGacatttaaattgaaaataatgtTGAAGCGTCATCTAGAGACCTGTGACAAGACACCGTCGAAGTCGCCGATGAAAGAGTTACTGGTGTCGTTAGAGCCAATCGACGCGGGCCCGGCTCAGTCGAATAAAATTGACTGCGAAATGTGCACTACAAAATTTAAGACGCTAGACAATTTAGAGAAGCATATGAGGGTAGTTCACGCGGCCGTcctcaatcgtaataaatacgaACAGAACGAGAACGGAAAGGTGAGCGTTCCCTGCTTCTACTGCGGACAACATTTTGACGATTACTACCTACACGCCGCGCACTTTGAAACCTGCTCCAAAAAGGACGATTCTGTTAATTTCACTTGCCCCGTATGCCAGAAGGTGATGACAAGGAAGAACTCGTACTTCATTCATTTAAAAGCCATGCATTTCGAGCCTCGCCTCGGCAACCGTGAAGAGGGCTCCAAACAGCCGTTCGAGTGCCGCATATGCAGTAAGAAGTTGGCATCACAAGACCAACTAATTACGCACCTTGCTGCACACATGTCTAATATAAACGACAATGAAGATGGCGCTGACGATGGCTCTCGTATGAGTCATGCAGAAGACGATACTTCGGTAACATCTAGCTACAGTAATGCGCATGTTCCCAGCGGGCCATTAAAATGCAGCATGTGCGAAAAACGATTCACGTACAAGAAAGCGCTCCTGAGTCACGAACAGAGACATCTCTCCGGAGACTTGGAGATAAAGACAGAGCCACCTGATAAGAATACTTCTAGCAATTTGCTAAGCGAGACGTTCCGTCAATCAGAGTCAGATTCTAGTCAGGAGGAAGGGGATGATAATACGTGCGACATTTGTGAGAAGCAGTTCTCCTATAAACGTCTCCTAATTCATCATAAACGGACCAAGCACAACATGAGCTCAGGCACTAAGCGAGCGAAAATTAACCTTAAAGACTGCACCGTCCGCTGTCTCATCTGCGACTTGGAGATGAAAGTTAGCGCAATAAATGAGCACAACCAAAAACACACATCTGTAAACATAAAGCCGAGGAATCTCTACACGTGTGCAGAATGCTCCGAGAAGTTTAAGAGTTGTAGCTCGCTGGCAAATCATATCAAACTAGTACACAGGCTGAAGCAGCCCCAGCAGCCCAAGTTAGAGGGAGCAGACTTGGCGGATTTTTGTGAAGTCGTTGTGACCAAGGCGGAACCCCTGGTGTCAAACCAGAGTCACAACGACTTTGGGATGGTTCCGTCGAATCAGGACGGCAGTCCGCTTGTTAATTTGAGCGGATTCACTTGCCCAATATGTAGTAAGCAGATGCCTACATTGATTTCGCTGAAGAGACATGTGAACTGGCATTCTAACGTTGGTAACAACATTGAGAAGAAGTTGGAGTGTTTTGTTTGCAAAGAGAAATTTAGATTCCAATGCCATTACCGGCTGCATATGCGCGAGCACTACAACGACCCCAACCTGGACCCGAAGCTGCTGACTTGCTCCATTTGCAACCGCAAGAGCAAGCACCTGCGTGCTGCAAAGGCCCATATGAACTTCCACAAGCAAACACGCTTCAAGAACAAAGACTACCAGTGTTCCATATGCAAGAGAATATTCCAGTTCAGAAAAGTCTACTTGTCGCACATGGCAATACATTATAAACGCGGCGAGAGCGTGAACACTGTTGTGGGCGTCGAGCTGCCGAATACCGCTGATAAAACGGTATTCGATGGAAAATATACCTGCCATCATTGCGGGAAAGTGTGCGATTCGGAGACCTCGTTAAAGCATCATATCATTTGGCACAAATCTAAAACTTCGCTCTTTGGTGCTCGCCACGAATGTCACATTTGCCATATCCAATTCACCAATAAGAGGAGATTAGAGCTGCACATCAGAACTCATTACGAGGACGACAATGGCCCATACAAGTGTCCCATATGTGGCAAAGGGTTTATCGACGAGGATTTCCACAGGAGACATGTGAAAGGACACAATTTCGATCACCAATCACATAAGGCTAGAATCGCGAACCTCAGGAAGGATAAAGTGAAGTGCCCAATTTGTGCTCGTTTCTATCCGGACTTAGTGAAACTCATACGCCATTTAAGAAGAACGCATCCTGAGAGCAAAATGATTAAGTCCGATCCAGATGCACCTGCCCAGAACTACTTCTCGTGCAAACTGTGTGCTAAAGTATTCTTAGATGAACGACGATTGCAGCACCATGAGGAGGCTCATTTGAGAAAGCCAGAGTTCTTTAAATGCAAATTCTGTGGCAAAAAAACTATCTCCTTGAAGAATCATAGAATTCATATTAAGGCCCACTTAACACAGAAATATATTGATGAGCCCCTGAAATGTATGCATTGTGATGAAATCTTTACTAGAGGGTATGACTTGCACCATCACTTACGCGATGTGCATGATATAAATGAAACATGGATTGCTGAGAGAACAGAGAAGACTTTAAACGGGCCATTGAAAGAATTGCAATGCTCAATCTGCCTTAAGATCCTTGCAAGTAAGGGCAACTTTGAACGCCATATCGACTATCACAACTCACTAAGGTGTAATTACTGCTTTGACTACTTCAGCTCCTTGAGGTTCTTGGAGGGGCACCTTGCATTCAGCTGTGAGAAAAAGAAATTGATAGGGGACACTGAAGTGTATCCCAAAAAGGTAAAATGTCACATATGTTACAAAGCTTTCCATCTGCAAGTGAAGTTAGACTGTCATCTACGCACACAGCACAATATCAAAGTTTCTAAAGAAGCATCCGAAGGCAAGAAGGAGATTGTCTGTGATTACTGCTTCCGAGTATTTGAGAATGAGTATGCTTTGAGCACCCACAAGATTTACCACCGCACGATAGGATATTACGGCTGCTTATATTGCAATCGAAAGTTTAACACTATAACTCTGTACAAAAAACACAAGAACCATCATTTATCACAACTTAACGTCGATAACCCAACAAAATGTGAGCACTGCGATGAGAAGTTTGTTGCATTCCGAGAGATGATATATCATATGAGGGACGTCCACGGTGACAACAAAGAGTGGATTGTAATGCCTAAGGAGTCCATAGAGGAGAAGTGCCCCATTTGTAACAAAATATTCTTTAACCTCCATAAACATTTGACTTATCATGAAGAGAATAGGTGCAAAAAATGCGCGGAATATTTCTATTCACAAATTGATTTCGATAATCATCTCTGTGCCATAGAAAGCGACGAAGAAGTTGACGAGAACAATGAGAACGATTTAAGACCAAAATATGAAGAGTGTGCCTTTTGCTTCAAGCCCATAACTAAGAAGAACTCACACCGTTTGCACGATCACATACATAGAGTTTCTGGTTCGATTTCGTGCCGATTTTGCCAtctcaaatttaaaactattgatgcaTTTAATATTCATGCGTTCTCCCACCGTAGTAGGAAGTATAATAAAAAGCCGATTAAATGTCGAAAGTGTGGCGAGAAGTTTGTGCGCTATGGCCCCTTCATGAAGCACATGAAATCTGCTCATAAGTCAAATCAGAAATTACATTATAGAACCATGGTAAAGCCAGAGCTCTGTGCTGTTTGTGGCGATGAGTTCCCAAATCTCCATAACCACTACCGAGCCCATTTGCAGAACCAGTGTCAATCATGTCACAAATACTTCACGTCATATAAACTATTTTCGATGCATCAGTGTGATAAAGAAGATTCTGACCCAACAAAAGTTTTCACATGCGATAAAGATCTAGTAAATTTGATTAATGCTTACACGCCTAAAGACGAGAAGGATGATGAGAAGTTTTATGGGCATACTGACGATGAAGACGAAGTAGAAGAGGAACCTGAAAAAGATATTCGAGACAATGAATATACAACACAGGATGAAGAGAGTCAAAATTCATCGGATGCAAACCTACATATGATGGTCCATACGCCTATTATATCAGATGTGTTGTCGCTTTATCAAAAGAAGGAAGACAAGCAACTCGATCCTGCTAATGAAGTTGTTAGTTTGTCAGATGATGACACTTTGGATGGTGAAGAAGTCGTAACTGTTATAACAATTGATGATTGA
- Protein Sequence
- MADIRHGIIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSTAPSPPNRQSSDSAFSNNTDVSSNNKPTASPIESKVTPSRGRKRSRESVDNASSSSQSHDYRPSSTKRVEELRTSQKRPRRSQNASYVDSDFDDNSVSHFSVETDSDEPLLKSEHKCKICGKEFLSKMSVLAHTKVHFRKSLKQNALVDIPKPTVTNESMEDANDVDDKLTCEKCDKTFKLKIMLKRHLETCDKTPSKSPMKELLVSLEPIDAGPAQSNKIDCEMCTTKFKTLDNLEKHMRVVHAAVLNRNKYEQNENGKVSVPCFYCGQHFDDYYLHAAHFETCSKKDDSVNFTCPVCQKVMTRKNSYFIHLKAMHFEPRLGNREEGSKQPFECRICSKKLASQDQLITHLAAHMSNINDNEDGADDGSRMSHAEDDTSVTSSYSNAHVPSGPLKCSMCEKRFTYKKALLSHEQRHLSGDLEIKTEPPDKNTSSNLLSETFRQSESDSSQEEGDDNTCDICEKQFSYKRLLIHHKRTKHNMSSGTKRAKINLKDCTVRCLICDLEMKVSAINEHNQKHTSVNIKPRNLYTCAECSEKFKSCSSLANHIKLVHRLKQPQQPKLEGADLADFCEVVVTKAEPLVSNQSHNDFGMVPSNQDGSPLVNLSGFTCPICSKQMPTLISLKRHVNWHSNVGNNIEKKLECFVCKEKFRFQCHYRLHMREHYNDPNLDPKLLTCSICNRKSKHLRAAKAHMNFHKQTRFKNKDYQCSICKRIFQFRKVYLSHMAIHYKRGESVNTVVGVELPNTADKTVFDGKYTCHHCGKVCDSETSLKHHIIWHKSKTSLFGARHECHICHIQFTNKRRLELHIRTHYEDDNGPYKCPICGKGFIDEDFHRRHVKGHNFDHQSHKARIANLRKDKVKCPICARFYPDLVKLIRHLRRTHPESKMIKSDPDAPAQNYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKAHLTQKYIDEPLKCMHCDEIFTRGYDLHHHLRDVHDINETWIAERTEKTLNGPLKELQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLIGDTEVYPKKVKCHICYKAFHLQVKLDCHLRTQHNIKVSKEASEGKKEIVCDYCFRVFENEYALSTHKIYHRTIGYYGCLYCNRKFNTITLYKKHKNHHLSQLNVDNPTKCEHCDEKFVAFREMIYHMRDVHGDNKEWIVMPKESIEEKCPICNKIFFNLHKHLTYHEENRCKKCAEYFYSQIDFDNHLCAIESDEEVDENNENDLRPKYEECAFCFKPITKKNSHRLHDHIHRVSGSISCRFCHLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVRYGPFMKHMKSAHKSNQKLHYRTMVKPELCAVCGDEFPNLHNHYRAHLQNQCQSCHKYFTSYKLFSMHQCDKEDSDPTKVFTCDKDLVNLINAYTPKDEKDDEKFYGHTDDEDEVEEEPEKDIRDNEYTTQDEESQNSSDANLHMMVHTPIISDVLSLYQKKEDKQLDPANEVVSLSDDDTLDGEEVVTVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157036;
- 90% Identity
- iTF_01157036;
- 80% Identity
- -