Cpal010027.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000128.1:1626184-1629589[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-12 6.9e-09 35.4 0.0 4 35 67 99 64 104 0.92
Sequence Information
- Coding Sequence
- ATGCAAAGTGATGTAAATATAAACGGCAATACCATTACTCACGCCGCTTCAGGGAATCGTGTACTTTCGGTCGACGCCGTACGCCTCATGGCCAAACTGCTGGAGAATTCACATGCGTGGCTGGGAGCCTCCACTTCATCTATTGCAGAATACCACGGTCATACTCTCAAGTTGAAAGCACCTATGTGGACGCAGAGCCAACTGCAAGAGGCTATTCAGGCGGTCGTCACGCAGCAGATGCGGTTCACCCAGGCCGCCACGCACTACGGAATACCCAAAGGAACTTTGTACGACAATATATTAGGAAAATCTAAACGGATGGCTGTGTTAGACGAAGCGGGGCTGCAACCCACTGAGGAACGGGCTGTGTTAGACTTTTGCTGCGAAACCAGTGTCTCGCCGTACAATAGACGTACCAAGAAATCTTTGGCTGAAGTCTTGTCTTTTGTAGAGAAATTGAGGAGAAGCAGAGACCCTGGCTTCGCATTCATAGGTCTCACGGGGTTTAGGTGGTGGTGGGCATTCTGTAAGAAGCATTCGATAGTATCGCTGTATTATGAAGGATCGAGTAAAGCTCGAAATTCTAAGGTAAAAGCTGAAAACAATACAGATGATGAATCTTAA
- Protein Sequence
- MQSDVNINGNTITHAASGNRVLSVDAVRLMAKLLENSHAWLGASTSSIAEYHGHTLKLKAPMWTQSQLQEAIQAVVTQQMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLQPTEERAVLDFCCETSVSPYNRRTKKSLAEVLSFVEKLRRSRDPGFAFIGLTGFRWWWAFCKKHSIVSLYYEGSSKARNSKVKAENNTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276272;
- 90% Identity
- iTF_01152959;
- 80% Identity
- -