Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01007559.1:14922-19056[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.013 1.1 10.1 2.9 1 23 319 342 319 342 0.96

2 18 1.4e-05 0.0011 19.5 0.7 2 23 351 372 351 372 0.98

3 18 0.00033 0.027 15.2 1.2 1 23 378 400 378 400 0.94

4 18 0.0016 0.13 13.0 1.0 1 23 406 428 406 428 0.94

5 18 0.00015 0.012 16.3 1.9 2 23 434 455 433 455 0.97

6 18 3.5 2.8e+02 2.5 0.6 5 23 469 488 467 488 0.89

7 18 3.6 2.9e+02 2.5 2.2 1 23 493 518 493 518 0.91

8 18 2 1.6e+02 3.3 3.4 1 23 534 557 534 557 0.89

9 18 0.00064 0.051 14.3 1.7 1 23 567 590 567 590 0.95

10 18 0.0059 0.47 11.2 0.2 1 23 600 622 600 622 0.98

11 18 0.00025 0.02 15.5 0.7 3 23 630 650 628 650 0.95

12 18 0.00069 0.055 14.2 0.5 1 23 661 684 661 684 0.91

13 18 0.0016 0.13 13.0 4.5 1 23 696 718 696 718 0.98

14 18 2e-06 0.00016 22.2 5.4 1 23 724 746 724 746 0.98

15 18 5.6e-06 0.00045 20.8 1.6 1 23 752 774 752 774 0.97

16 18 0.0046 0.37 11.6 2.3 2 23 782 803 781 803 0.97

17 18 0.00095 0.075 13.7 3.9 1 23 809 831 809 831 0.96

18 18 0.00034 0.027 15.2 2.8 1 23 837 860 837 860 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.013	1.1	10.1	2.9	1	23	319	342	319	342	0.96
2	18	1.4e-05	0.0011	19.5	0.7	2	23	351	372	351	372	0.98
3	18	0.00033	0.027	15.2	1.2	1	23	378	400	378	400	0.94
4	18	0.0016	0.13	13.0	1.0	1	23	406	428	406	428	0.94
5	18	0.00015	0.012	16.3	1.9	2	23	434	455	433	455	0.97
6	18	3.5	2.8e+02	2.5	0.6	5	23	469	488	467	488	0.89
7	18	3.6	2.9e+02	2.5	2.2	1	23	493	518	493	518	0.91
8	18	2	1.6e+02	3.3	3.4	1	23	534	557	534	557	0.89
9	18	0.00064	0.051	14.3	1.7	1	23	567	590	567	590	0.95
10	18	0.0059	0.47	11.2	0.2	1	23	600	622	600	622	0.98
11	18	0.00025	0.02	15.5	0.7	3	23	630	650	628	650	0.95
12	18	0.00069	0.055	14.2	0.5	1	23	661	684	661	684	0.91
13	18	0.0016	0.13	13.0	4.5	1	23	696	718	696	718	0.98
14	18	2e-06	0.00016	22.2	5.4	1	23	724	746	724	746	0.98
15	18	5.6e-06	0.00045	20.8	1.6	1	23	752	774	752	774	0.97
16	18	0.0046	0.37	11.6	2.3	2	23	782	803	781	803	0.97
17	18	0.00095	0.075	13.7	3.9	1	23	809	831	809	831	0.96
18	18	0.00034	0.027	15.2	2.8	1	23	837	860	837	860	0.97

Sequence Information

Coding Sequence: ATGGTAGACAGCGGTGTGCTGAAAACGTTTACATTCCTGTACTCGGAGAATCCACCGTACGTGgataaaaatctagaaaacaTGATCGACTTGATCGAAGAACTGAAGACCATATTAGTGAAACTATGCGCTGGAATTCAACCCCAAAACAAACCGCTAATGGAACACCAGTCGACTTACGACATTTTATCGTCAGCTTCCATCGATAACGAATGTGTTTCTACCGAAGAGACCATCGCCTATCCTCGACACACCGACGAGTTCTCTTTCAACGAGATACACAACACTATCGAACGAAACATTCAACTGATAGCGGAAAACGAGAATCGCATGTGTGACAATCTAGACCACAGTTTTTCATCGCAAGAAATAACGACGAACAATTTAAAGTCAACCGAGCACGCGATGTTCTCCGAATGCAGCAGCATCAACAGTTTATTAAAAGAAGACCAGAGTGATTTCCTGCAAGATATGAGGTTCCCTTCGAACGAGCCTCCAGATAGACCTATACCGGAGACGAATCCCGTCCATTATAATCAACACGTTCAGTACAGCCAGCAGTGCGAAAGTTCGTTGCAGAATATTGATTTGGATATTCTGAATCGTAGCGGAGAATCTTATCAGCAGCCGAACTATAGCGAAAgaataaattccaattttgatagaattttcgACGATCAGTTTCCGGTAAATGAATCTTTGTTGGAGTCGGAATGCTGGAACGATATTAATTTACCGTCGGCTGAACCGATGACTTCGGGTATTGAAATTCAATCGTCGGCTTACGAATtgactaatttaaaaaataaaatcggaTCTAACTTGGACGAAACATTAGTGTCGGATTTAGATTCACGGTTGAGCTCCGAGTTGACCAGTACCGTGTCTAGTGTTCCTGCTCCTGCTTACGATATCAGTAAAGATAAACATTCCGatgatttcgatcaaaataaattcttctGCGAGCATTGCGGCGATATTTTCGATACGaagttgaaactgaaaatacaTTTGAAAAGGAAGCACAACGTTAATGTGAATAATGTTAATCGATGCGACCAATGCGGTAAAGTATTCAAGAAAAGAGCTACCCTGTTGACGCATGCTCGAATTCATTCGGAAATTAAACCGTATAAATGTCCTTATTGTTGGAAAAGTTTCACTCAGAAGATCACCAGAGATTCTCACGTGCAGCTTCACACAGGATCGTATAAATTTTCCTGCCCAGTTTGCGAGAAACGATTTCCAACCCAAgccaagttgaattttcattccaagAGTCACGAGAAACCAGAACTGCGCTGTGAAGTATGCTCGAAAATGTTCACTACCAAGCAGTATTTAAACGGGCATAAGAAATCACACTTCAAACCGAATCCGCCCAAAGGCAAGAATTTTTCGTGCAAGTGCAGCgttttgttttacaaaaaGAAAGACCTACTGGTGCACATCAAAGATTCGCATCCGGAGATGAAATTCATGTGTTACCATGCCGGCTGCTCCCGAACCTATCCAACTTACAAGAAAATGATCGATCACGTTTATAAGAAGCATACCACCAAGTCATCCTGCGAAACTGATAAAAAGACTGATCAGCTGCACCATTGTTCGAGCTGTAAGataaatttcgtcgaaaaagcCAGCTACTTCAGGCACAATTTGTTAGTTCATAGGGAGAAAATAGACGTGGAAAATTCCTTCAACTGCGTCCACTGCGATAAACGCTTCACCACCGAGCCCAGTCTCGACGATCATCTGgagaaatttcacaattcgGCCAATTCCAAAgaaatgaaTTACTCGTGTTCGATCTGCGGCAGCTTGTTTTACGCCGAGTCGGCGCTCAAGGAGCATTACAAGATACACTCCGATTTTAGTACTCATCTGTGCCAAACCTGCGGAATGGTGTTCTCGGAAAAAGCCAACTTTCTGGCGCATCAGAGCGTTCACGACACGAAAAAGGAATCTACCGCCAAaaaattccaatgcgAAACTTGCGAGACACGATTCGAGAATAAAATGGAACTGAAACAGCACGAGCTAGACGTACACAATATCGTTCCGAATGTCGAAGAGCTGAAACCGTACTCGTGTTCGTTTTGCGACAAGCGTTTCACGACTAGAGGCAAATGTAACATACACATGGAAACGCACAGCAAGGAACGTAATCACAAATGTACCAAATGCGATAAACGATTTTACCGTCGGGATTTGCTGAAAGAGCACATGAATACCCATAACGGGTACCGGGGCCACGTCTGCAAAACCTGCGGCCTGGCGTATTCGCAAAAGTCCAGCTTGAAGGCGCACGAAAAAACGCACGATAAAGTCGAACAGTCTATCAGCTGCGAACAGTGTCAGAAAGTGTTCCACAGTAAGCAGGCGTTGAATTTCCACATTAAAACGCACGACGGCGTGTTCAGatTCGCGTGCGAGGTATGCGGCAAGAAGTTCAACCGCAAGTGCCATTACGATCTGCATCTAGCTAGTCATTCGGTGGAAAGACCgttcaaatgtttgaaatgcCCGGCCTCGTATAAGACCAGCAAACATCTGAGGGAgcatgcgaaaaaaatacaccaaaacGAGCCGAACTTCAGCTCGTTGTTTGATTCGATTTATACGGAGGACGAGGTGGTCAGCCAGCAGAATCTGCTCGACGAGTACATACCGTCGATTAATCCGCTCCAGTCGGAGATGATTTTCGAGAAAGCTCAAGCGGATTCGTTTTAG
Protein Sequence: MVDSGVLKTFTFLYSENPPYVDKNLENMIDLIEELKTILVKLCAGIQPQNKPLMEHQSTYDILSSASIDNECVSTEETIAYPRHTDEFSFNEIHNTIERNIQLIAENENRMCDNLDHSFSSQEITTNNLKSTEHAMFSECSSINSLLKEDQSDFLQDMRFPSNEPPDRPIPETNPVHYNQHVQYSQQCESSLQNIDLDILNRSGESYQQPNYSERINSNFDRIFDDQFPVNESLLESECWNDINLPSAEPMTSGIEIQSSAYELTNLKNKIGSNLDETLVSDLDSRLSSELTSTVSSVPAPAYDISKDKHSDDFDQNKFFCEHCGDIFDTKLKLKIHLKRKHNVNVNNVNRCDQCGKVFKKRATLLTHARIHSEIKPYKCPYCWKSFTQKITRDSHVQLHTGSYKFSCPVCEKRFPTQAKLNFHSKSHEKPELRCEVCSKMFTTKQYLNGHKKSHFKPNPPKGKNFSCKCSVLFYKKKDLLVHIKDSHPEMKFMCYHAGCSRTYPTYKKMIDHVYKKHTTKSSCETDKKTDQLHHCSSCKINFVEKASYFRHNLLVHREKIDVENSFNCVHCDKRFTTEPSLDDHLEKFHNSANSKEMNYSCSICGSLFYAESALKEHYKIHSDFSTHLCQTCGMVFSEKANFLAHQSVHDTKKESTAKKFQCETCETRFENKMELKQHELDVHNIVPNVEELKPYSCSFCDKRFTTRGKCNIHMETHSKERNHKCTKCDKRFYRRDLLKEHMNTHNGYRGHVCKTCGLAYSQKSSLKAHEKTHDKVEQSISCEQCQKVFHSKQALNFHIKTHDGVFRFACEVCGKKFNRKCHYDLHLASHSVERPFKCLKCPASYKTSKHLREHAKKIHQNEPNFSSLFDSIYTEDEVVSQQNLLDEYIPSINPLQSEMIFEKAQADSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01472633; iTF_00194615; iTF_01263832; iTF_00725751;
90% Identity: iTF_01472633;
80% Identity: -