Fvir003001.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01020880.1:8998-14088[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0025 0.22 12.2 3.4 1 23 342 365 342 365 0.96 2 18 2.8e-05 0.0025 18.3 2.0 2 23 374 395 374 395 0.98 3 18 0.00075 0.068 13.8 1.2 1 23 401 423 401 423 0.94 4 18 0.0086 0.78 10.5 1.0 1 23 429 451 429 451 0.93 5 18 5.7e-05 0.0052 17.3 1.8 2 23 457 478 456 478 0.96 6 18 0.12 11 6.8 1.4 1 23 489 512 489 512 0.96 7 18 1 91 4.0 1.5 1 23 517 542 517 542 0.92 8 18 0.011 1 10.1 1.6 2 23 558 580 557 580 0.89 9 18 0.0013 0.11 13.1 1.6 1 23 590 613 590 613 0.95 10 18 0.0051 0.46 11.2 0.2 1 23 623 645 623 645 0.98 11 18 0.0015 0.14 12.9 0.7 3 23 653 673 651 673 0.95 12 18 0.00041 0.038 14.6 0.3 1 23 684 707 684 707 0.91 13 18 0.0005 0.045 14.4 4.8 1 23 719 741 719 741 0.98 14 18 2.1e-07 1.9e-05 25.0 3.6 1 23 747 769 747 769 0.99 15 18 4.4e-06 0.0004 20.8 0.9 1 23 775 797 775 797 0.97 16 18 0.023 2.1 9.1 2.7 2 23 805 826 804 826 0.97 17 18 0.00062 0.057 14.1 3.1 1 23 832 854 832 854 0.96 18 18 0.00084 0.076 13.6 3.6 1 23 860 883 860 883 0.97
Sequence Information
- Coding Sequence
- ATGCATCGTATTGGCAATGCTTCGGCAACTATTACAAACATTTTCCAgctgatttcaaaatttctatccAAAATGGTGGAGAGTGGCGTACTGAAAACATTCACGTTTCTGTATTCAGAAAATCATCCGTACGTTGataaaaatctagaaaatatGATCGATATAATAGAAGAATTGAAGGCTGTACTATTGAAACTATGCGCGGGAATACAGCCACAAAACAAGCCGCTCATGGAACACCAAAACACCTATCATATTCTTTCATCAGCTGCTATAGATAACGAATGCGTCACTACCGAAGAAAACATTACTTATCCCAGACATACGGATGAGTTCTCTTTTAACGAAATCCATAACACTATAGAACGAAATATTCAGCTTATTACGGAGAATGAAAATCGTATGTGTGATAACTTGGACCACAGCTTTTCATCTCAGGAAATGACAACCAGCACGTTGAAATCTACCGAACATACTATGTTCTCCGAATGTAGCAGTATCAATAGTTTATTAAAAGAAGATCAAAATGATTTCCTTCAAGATATGCGATTCCCTTCGACGGAATCTCAAGATAGACCTATTCAAGAGACCAGTACCGTACATTATAATCAACACGTACAATATTCTCAGCAATGTGAAAACActttacaaaatattgatcTGGATATTTTAAATCGTAGCAGCGAATCTTATCAACAGCCAAATTATAATGAtagaataaatacaaattttgatagaattttCGACGATCAGTTTCCCGAAAATGAATCGTTATTAGAATCTGAATGTTGGAATGATATAAATTTACCATCTGCCGAACCAATTACATCGggTATCGAAATTCAAGCTTCGCCTTTCGAGTtgactaatttaaaaaataagattagCTCGAATTTGGACGAATCGCTGGTGTCTGATTTGGATTCGACATTAAGTTCCGAATTATCTAATACTGTATCCAATGTGTCCGGTgcttatgaaataaataaagataaaCATTCCGACGACTTTGatcagaataaatttttctgcgAACATTGCGGTAATATTTTCGATACGAAATTGAAGCTAAAGATTCACTTGAAGAGAAAACATAACGtatatttgaataatattaatcGATGCGATCATTgtggtaaaatattcaaaaaaagagcTACTTTATTGACTCATGCCCGAATCCATTGCGAAATTAAGCCGTACAAGTGTCCTTATTGTTGGAGAACTTTCACACAAAAGATTACCAGAGATTCTCATGTGCAACTTCACACAGgATCGTATAAATTTGCATGCCAAGTCTGCGAGAAAAGATTTCCCACCCAAGCCAAGTTGAATTTCCATTCTAAAAGTCACGAAAAACCAGAATGGCGTTGTGAAATGTGCTCGAAAATGTTTACAACCAAACAATACTTGAACgtgcataaaaaattgcattataaACCGAATCCAGCTCAAGGCAAGAGCTTTTCGTGTATGGAATGCAgcgttttatttcataaaaaaagagATCTATTGGTGCATATTAAAGAATCACATccagaaatgaaattcatgTGTTACTACGCCGGATGTTCCCGAACGTATCcgacttataaaaaaatgaccgATCATGTTTATAAAAAACACACAACCAAGTCATcttgtgaaaatgaaaaaaaGACTGATAGATTACATTGTACCATTTGTAGAATAAGTTTCGTCGAAAAGAGCAGTTTCTTTAGACACAATCTACTAGTACACAGAGAAAAAGTagacgttgaaaattctttcaattgcGTTCATTGTGATAAACGTTTCACTGCCGAATCTAGTCTCGATGATCACCTGGAAAAGTTCCATAATTCACTCCATTCCAAAGAAATGAATTATTCGTGTTCGATTTGTGGTAGTTTATTTTACGCCGAGTCCGCTCTAAAGGAGCATTACAAGATACATTCAGATTATAGTACACATTTGTGCCAAACTTGTGGAATGGTTTTCTCTGAAAAGGCCGATTTTCTGATGCATCAAAGTGTTCACGATATGAAGAAAGATACCACTACGAAAAAATTCCAATGCGAAACATGCGACGTAAGATTTGAGAATAAAATGGAGCTAAAACAACACGAATTAGACGTGCACAATATCGTTCCAAATGTCGAAGAACTGAAACCATATTCTTGTTCGTACTGCGACAAACGTTTTACCACGAGAGGCAAATGTAATTTACATATGGAAACCCATAGCAAGGAACGTAACTACAAATGCACAAAATGCGATAAACGGTTTTACCGTCGGGATTTGCTGAAGGAGCACATGAATACGCATAACGGTTACCGAGCACACGTCTGCAAAATTTGCGGCCTGGCGTATTCGCAAAAGTCGAGCTTGAAGGCTCACGAAACGACGCATGAAAAAGTCGAAGAATCTATCAGCTGCGAGCAGTGTCAGAAAATATTCCACAGTAAACAGGCGTTAAATTTCCATCTAAAAACACACGACGGCGTGTTCAGaTTCGCGTGCGAGGTGTGCGGTAAGAAATTCGTCCGGAAATGTCATTACGATTTGCATTTGGCTAGTCATTCGGTGGAGAGACCGTTCAAGTGTTTGAAATGCCCGGCGTCCTACAAGACGAGTAAACATTTGAGGGagcattcgaaaaaaatacatcagaaCGAGCCAAACTTCAGCTCACTATTTGATTCGATTTATACGGAAGACGAGGTGGTCAGTCAACAGAATATGTTGGACGAATACATACCGTCGATTAATCCGCTCCAGTCGGAgcttatttttgataaagctCAAGGCTCTTCGTTTTAG
- Protein Sequence
- MHRIGNASATITNIFQLISKFLSKMVESGVLKTFTFLYSENHPYVDKNLENMIDIIEELKAVLLKLCAGIQPQNKPLMEHQNTYHILSSAAIDNECVTTEENITYPRHTDEFSFNEIHNTIERNIQLITENENRMCDNLDHSFSSQEMTTSTLKSTEHTMFSECSSINSLLKEDQNDFLQDMRFPSTESQDRPIQETSTVHYNQHVQYSQQCENTLQNIDLDILNRSSESYQQPNYNDRINTNFDRIFDDQFPENESLLESECWNDINLPSAEPITSGIEIQASPFELTNLKNKISSNLDESLVSDLDSTLSSELSNTVSNVSGAYEINKDKHSDDFDQNKFFCEHCGNIFDTKLKLKIHLKRKHNVYLNNINRCDHCGKIFKKRATLLTHARIHCEIKPYKCPYCWRTFTQKITRDSHVQLHTGSYKFACQVCEKRFPTQAKLNFHSKSHEKPEWRCEMCSKMFTTKQYLNVHKKLHYKPNPAQGKSFSCMECSVLFHKKRDLLVHIKESHPEMKFMCYYAGCSRTYPTYKKMTDHVYKKHTTKSSCENEKKTDRLHCTICRISFVEKSSFFRHNLLVHREKVDVENSFNCVHCDKRFTAESSLDDHLEKFHNSLHSKEMNYSCSICGSLFYAESALKEHYKIHSDYSTHLCQTCGMVFSEKADFLMHQSVHDMKKDTTTKKFQCETCDVRFENKMELKQHELDVHNIVPNVEELKPYSCSYCDKRFTTRGKCNLHMETHSKERNYKCTKCDKRFYRRDLLKEHMNTHNGYRAHVCKICGLAYSQKSSLKAHETTHEKVEESISCEQCQKIFHSKQALNFHLKTHDGVFRFACEVCGKKFVRKCHYDLHLASHSVERPFKCLKCPASYKTSKHLREHSKKIHQNEPNFSSLFDSIYTEDEVVSQQNMLDEYIPSINPLQSELIFDKAQGSSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150652;
- 90% Identity
- -
- 80% Identity
- -