Bdim018375.1
Basic Information
- Insect
- Balanococcus diminutus
- Gene Symbol
- -
- Assembly
- GCA_959613365.1
- Location
- OY390718.1:45625693-45633237[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.014 1.1 10.1 2.9 1 23 339 362 339 362 0.96 2 18 1.5e-05 0.0011 19.4 0.7 2 23 371 392 371 392 0.98 3 18 0.0004 0.031 14.9 1.3 1 23 398 420 398 420 0.94 4 18 0.0078 0.61 10.8 1.6 1 23 426 448 426 448 0.94 5 18 0.00016 0.012 16.2 2.6 2 23 454 475 453 475 0.97 6 18 0.012 0.92 10.3 0.7 1 23 486 509 486 509 0.95 7 18 1.6 1.2e+02 3.6 1.0 1 23 514 539 514 539 0.91 8 18 0.018 1.4 9.7 1.4 2 23 555 577 554 577 0.89 9 18 0.00012 0.0096 16.5 2.5 1 23 587 610 587 610 0.96 10 18 0.0061 0.47 11.2 0.2 1 23 620 642 620 642 0.98 11 18 0.00026 0.02 15.5 0.7 3 23 650 670 648 670 0.95 12 18 0.0019 0.14 12.8 0.3 1 23 681 704 681 704 0.91 13 18 0.00032 0.025 15.2 4.4 1 23 716 738 716 738 0.98 14 18 1.2e-06 9.4e-05 22.8 3.2 1 23 749 771 749 771 0.99 15 18 1.6e-06 0.00012 22.5 1.1 1 23 777 799 777 799 0.98 16 18 0.027 2.1 9.1 2.7 2 23 807 828 806 828 0.97 17 18 0.002 0.16 12.7 4.1 1 23 834 856 834 856 0.95 18 18 0.001 0.078 13.6 3.6 1 23 862 885 862 885 0.97
Sequence Information
- Coding Sequence
- ATGCATCGCATCAGCAACGCTTCGACAACCATTACAAACATCTTACAGCTGATTTCCAAGTTCCTTTCCAAAATGGTAGAAAGCGgtgttttgaaaacatttacaTTCCTGTATTCGGAAAACCACACATACGtggataaaaatctcgaaaatatGATCGACATAATCGAAGAACTAAAGACCATATTACTAAAAGCATGCGCCGGAATTCCACCTCAGAACAAACCACTAATAGAACACCAAACCACCTACGATATCCTATCTTCGGCTTCCATCGACACCGAATGTGTTTCCACCGAAGAAAACATCACTTACTCTCGACACAccgatgaattctcgttcaaCGAAATACACAACACCATTGAACGTAATATTCAGTTAATCGCCGAAACCGAAAATCGCATGTGTGATGATTTAGATCATAGTTTTTCGTCTCAAGAAATCACGACGAGTACTTTAAAATCGACCGAACACACAATCTTCTCCGAATGCAGCAGTATAAACAGTTTGCTAAAAGAAGATCAGAATGATTTCCTACAAGATATGAGATTCCCTTCGAACGAATCGCAAGATAGATCGATACCGGAGACGAATGCTGTTCATTATCAGTACAGCCAGCAGTGCGAAAATACGTTACAGAATATCGATTTGGATATTTTAAACCGTACCAGCGAATCGTATCAGCAGCCTGGTTATAGTGAAAGAATAAATCcgaattttgatagaattttcgaCGATCAGTTTCCCGAAAATGAATCTTTATTGGAATCCGAATGTTGGAATGATATTAATTTACCGTCTGCTGGGCCGATGTCTTCGggtattgaaattcaagctTCGCCTTTCGAATTAAcgaatttgaagaataaaataggATCGAATTTGGATGAATCTTTGGTATCTGATTTAGATTCTCGTTTGAGCTCCGAATTATCCAATACTGTGTCCAGTGTTCCTAATTCCGCATATGATGTTAGTAAAGATAAGCATTCTGaTGATTTTGACCAGAATAAATTCTTCTGCGAGCATTGTGGTGATATCTTTGATACGAAATTAAAGCTGAAAATTCACCTGAAAAGAAAACACAatgtttatttaaataatattaatcGATGTGATCAGTGTGGTAAAGTATTCAAGAAGAGAGCTACGTTATTGACTCATGCTCGAATTCATTCAGAAATTAAACCCTACAAGTGTCCATATTGCTGGAAAActttcacccaaaaaattaccagagaTTCTCACGTACAACTTCACACAGGAtcatacaaattttcatgtcAAGTCTGCGAGAAACGATTTCCAACCCAAGCCAAGTTGAATTTCCATTCGAAAAGTCACGAAAAACCAGAACTGCGTTGCGAAGTGTGCTCGAAAATGTTCACTACGAAGCAATATTTCAacgttcataaaaaatcacacTATAGACCTAATCCGcCTCAAGGCAAGAGCTTCTCGTGTACCGAATGCAgcgttttattttataagaaGAGAGATTTACTGGTGCATATCAAGGATTCGCATCCTGAGATGAAATTCATGTGTTATTACGCCGGATGTTCCCGAACTTACCCGACCTATAAGAAGATGATCGATCACGTTTATAAGAAGCATACCGTAAAATCATCCAATGAAAACgataaaaagacTGATAAATTACATTGTACGATTTGTAGAATAAGTTTCGTCGAAAAATCCAGCTACTTCAGGCACAATTTGTTAGTACACagggaaaaaatagatatcgAAAATTCCTTCAACTGTGTCCATTGCGATAAACGTTTCACTACCGAGTCTAGTCTCGACGACCAtttggagaaatttcataattctGCGAACTCCAAAgAAATGAATTATTCGTGTTCAATCTGCGGTAGCCTGTTTTACGCCGAATCAGCCCTCAAAGAGCATTACAAAATACATTCGGACTTTAGTACTCATCTGTGCCAAACTTGCGGAATGGTTTTCTCAGAAAAGGCCAATTTTCTCGCCCATCAGAGTGTTCACGACTTGAAAAAGGAATCTACGACGAAaaaattccaatgcGAAACTTGCGAAGCCCGATTCGAGAATAAAATGGAGCTAAAACAGCACGAACTAGACGTACACAATATCGTTCCAAATGTCGAAGAACTCAAACCATACTCTTGTTCTTATTGCGACAAACGATTCACGACCAGAGGAAAATGTAACATTCACATGGAAACTCATAGCAAGGTAGTCTCGATTCTGgAACGAAATTACAAATGCGTAAAATGCAACAAACGATTCTATCGTCGGGATTTGCTGAAAGAGCACATGAATACCCATAACGGTTACCGAGGTCACGTCTGCAAAATATGTGGCCTGGCGTATTCTCAAAAATCGAGCTTAAAGGCGCACGAAAAAACACacgaaaaagtggaaaaatctaTCAGCTGCGAACAATGTCAGAAAATATTCCATAGTAAACAGGCCTTGAATTTCCACCTAAAAACTCACGACGGCGTGTTCAGATTCGCGTGCGAAGTGTGCGGTAAGAAATTCAACCGAAAGTGCCATTACGACCTGCATCTAGTCAGTCATTCGGTGGAGAGACCGTTCAAGTGTTTGAAATGCCCGGCATCCTATAAGACCAGCAAACATTTGAGGGagcattcgaaaaaaatacaccaaaaCGAGCCCAACTTCAGTTCGCTATTTGATTCGATTTATACGGAGGACGAAGTGGTTAGCCAGCAGAATTTACTCGATGAGTACATACCGTCGATTAATCCGCTCCAGTCGgagttgatttttgataaagCTCAAGGGACTTCGTTTTAG
- Protein Sequence
- MHRISNASTTITNILQLISKFLSKMVESGVLKTFTFLYSENHTYVDKNLENMIDIIEELKTILLKACAGIPPQNKPLIEHQTTYDILSSASIDTECVSTEENITYSRHTDEFSFNEIHNTIERNIQLIAETENRMCDDLDHSFSSQEITTSTLKSTEHTIFSECSSINSLLKEDQNDFLQDMRFPSNESQDRSIPETNAVHYQYSQQCENTLQNIDLDILNRTSESYQQPGYSERINPNFDRIFDDQFPENESLLESECWNDINLPSAGPMSSGIEIQASPFELTNLKNKIGSNLDESLVSDLDSRLSSELSNTVSSVPNSAYDVSKDKHSDDFDQNKFFCEHCGDIFDTKLKLKIHLKRKHNVYLNNINRCDQCGKVFKKRATLLTHARIHSEIKPYKCPYCWKTFTQKITRDSHVQLHTGSYKFSCQVCEKRFPTQAKLNFHSKSHEKPELRCEVCSKMFTTKQYFNVHKKSHYRPNPPQGKSFSCTECSVLFYKKRDLLVHIKDSHPEMKFMCYYAGCSRTYPTYKKMIDHVYKKHTVKSSNENDKKTDKLHCTICRISFVEKSSYFRHNLLVHREKIDIENSFNCVHCDKRFTTESSLDDHLEKFHNSANSKEMNYSCSICGSLFYAESALKEHYKIHSDFSTHLCQTCGMVFSEKANFLAHQSVHDLKKESTTKKFQCETCEARFENKMELKQHELDVHNIVPNVEELKPYSCSYCDKRFTTRGKCNIHMETHSKVVSILERNYKCVKCNKRFYRRDLLKEHMNTHNGYRGHVCKICGLAYSQKSSLKAHEKTHEKVEKSISCEQCQKIFHSKQALNFHLKTHDGVFRFACEVCGKKFNRKCHYDLHLVSHSVERPFKCLKCPASYKTSKHLREHSKKIHQNEPNFSSLFDSIYTEDEVVSQQNLLDEYIPSINPLQSELIFDKAQGTSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150652;
- 90% Identity
- -
- 80% Identity
- -