Pvib011440.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000150.1:731159-740289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0029 0.27 12.2 3.4 1 23 319 342 319 342 0.96 2 18 0.00033 0.032 15.1 0.2 2 23 351 372 351 372 0.97 3 18 0.0019 0.18 12.8 1.4 1 23 378 400 378 400 0.94 4 18 0.027 2.6 9.2 0.8 1 17 406 422 406 426 0.90 5 18 2.7e-05 0.0026 18.6 1.7 2 23 434 455 433 455 0.97 6 18 0.021 2 9.5 0.9 1 23 466 489 466 489 0.95 7 18 8.9 8.6e+02 1.2 1.2 1 23 494 519 494 519 0.90 8 18 0.056 5.4 8.1 0.9 2 23 537 559 536 559 0.89 9 18 0.00017 0.017 16.0 2.5 1 23 569 592 569 592 0.95 10 18 0.0058 0.56 11.2 0.2 1 23 602 624 602 624 0.98 11 18 0.00048 0.046 14.6 1.2 3 23 632 652 630 652 0.95 12 18 0.0016 0.15 13.0 0.4 1 23 663 686 663 686 0.91 13 18 0.0012 0.12 13.4 4.3 1 23 698 720 698 720 0.96 14 18 2e-06 0.00019 22.2 4.0 1 23 726 748 726 748 0.99 15 18 3.2e-06 0.0003 21.5 1.8 1 23 754 776 754 776 0.98 16 18 0.026 2.5 9.2 2.7 2 23 784 805 783 805 0.97 17 18 0.00093 0.09 13.7 3.9 1 23 811 833 811 833 0.96 18 18 0.0015 0.14 13.1 4.1 1 23 839 862 839 862 0.97
Sequence Information
- Coding Sequence
- ATGGTGGAAAGTGGCGTATTGAAGACTTTTACGTTCCTGTATTCGGAAAACCACCCATACGTGGATAAAAACCTAGAAGCAATGATCGAAATAATAGAAGAACTAAAGGCCATATTGATGAAAGTATGCGCCGGAATACAACCTCAAAACGAACCGCTTCTGGAACACCAAAACACATACCATATTCTATCATCAGCTTCCATAGATACAGAATGCGTTTCGACAGAAGAAAACATTACGTTTCCTCGCCATACAGCAGACGAGTTCTCTTTTAACGAAATACACAACACGATCGAACGCAACATTCAACTTATTGCCGAAACCGAAAGTCGTATGTGCGATGATCTGGATCACAGTTTTTCATCGCAGGAAATCACCACCAGTACTTTGAAATCCACCGAGCACACGATGTTTTCCGAGTGCAGCAGTATCAATAGTTTATTAAAAGAGGATCAGAATGATTTCTTACAAGATATGCGATTTAATTCGACTGAATCTCAAGATAGTTCTATACCTGAGACAAATCCGGTCCATTATAGTCAACACGTACAGTATTCTCAGCAGTGCGAAAATACATTGCAGAATATAGATTTGGATATTTTAAATCGTAGTAGCGAATCGTACCAGCAACCTAATTACAGTGAAAGaataaatccaaattttgatagaatttttgacGATCAGTTTCCGGAAAACGAATCTTTATTGGAGTCTGAATGCTGGAATGATATTAATTTACCATCGACTGAGCCTATTACTTCGGGTATTGAAATTCAAGCGTCGCCTTTcgaattgaataatttgaagAATAAGATTGGGTCGAATTTAGATGAATCCCTGGTGTCCGATTTGGATTCGACGTTGAGCTCCGAGTTATCAAATACGGTGTCTAGTGTTCCTGCTGGTTATGATATTAATAAGGAGAAACATTCTGacGATTTTGATCAGAATAAATTCTTCTGCGAACATTGCGGCAATATTTTCGATACGAAGTTGAAACTTAAAATCCATTTGAAAAGGAAGCATAACGTGTATGTGAACAATATAAACCGATGTGATCAATGTGGCAAAGTATTCAAGAGAAGAGCTATTTTACTAATCCACGCTCGAATCCACTCAGATATTAAACCCTACAAGTGTCCTTTTTGTTGGAAAACTTTCACTCAGAAAATTACCAGAGATTCTCACGTTCAACTTCACACAGGATCATATAAATTTTCCTGTCAAGTCTGCGAGAAACGATTTCCCACCCAGGCCAAGTTGAATTTCCACTCAAAATGTCACGAAAAACCTGAATTACGTTGTGAAATATGTTCGAAAATGTTCACAACCAAGCAATACCTGAATCTGCATAAGAAAGTGCACTTTAGACCGAACCCTCCCAGAGGTAAAAGTTTCTCGTGTACGGAATGCAGCGTTCTATTTTATAAAAAGAGAGATCTGCTGATGCATATCAAAGATTCTCATCCGGAGATGAAATTTATGTGTTATTTTGCTGGATGTTCGCTAACGTATTCGACGTATAAGAGGATGATCGATCACGTTTATAAAAAGCATACTATGAAATCATCTTGcgaaaatgataaaaagactgATCCGAATAAATTATATTGTTCGAGTTGTAGAATTAGTTTCGTCGAGAAGAGTAGCTTCTTTAGGCATAATTTACTGGTACACAGAGAGAACGTAGATGTGGAGAATTCCTTCAATTGCGTTCATTGTGATAAACGATTTACTACTGAATCTAGTCTGGATGATCATTTGGATAAATTCCACAATTTGGTGCATTCCAAAGAAATGAATTACTCGTGTTCGATTTGTGGCAGTCTTTTTTACGCCGAGTCAGCTTTGAAGGAGCATTACAAGATACATTCCGATTACAATACACATTTGTGCCAAACCTGCGGAATGGTTTTCTCTGAAAAAGATAACTTCCTGTTGCACCAAAGCGTTCACGATTTGAAGAAAGATACCTCATCGAaAAAATTCCAATGCGAGACATGCGACTCGAGGTTTGAGAACAAAATGGAGCTAAGACAGCACGAATTAGATGTCCACAATATTGTTCCTAGTGTCGAAGAATTGAAACCATACCTGTGTTCATATTGCGACAAACGTTTCACCACAAAAGGAAAATGTAATTTACACATGGAAACTCACGGCAAGGAACGTAATTACAAATGTACGAAATGCGATAAACGGTTCTTCCGCCGGGACTTGCTGAAAGAGCACCTGAAAACCCATAACGGTTACCGAGCCCACGTTTGTAAAATATGCGGCCTAGCGTATTCGcaaaaatcgagtttgaaaaccCACGAGAAAACCCACGAAAAGGTCGAAGAATCGATCAGCTGCGAACAGTGCCAGAAAATATTCCACAGCAAACAGGCGCTGAATTTCCACCTAAAAACTCACGATGGGGTGTTCAGGTTCGCGTGCGAGGTGTGCGGAAAGAAATTCAACCGGAAATGCCATTACGACTTGCATTTGGCCAGTCATTCGGTGGAAAGGCCGTTCAAGTGTTTGAAATGCCCAGCGTCCTATAAGACCAATAAACATTTGAGGGAGCATTCCAAAAAGATGCATCAAAACGAGCCGAATTTCAGTTCGCTGTTCGATTCGACCTTTACCGAAGATGAGGTGGTCAGTCAGCAGAATTTACTGGACGAGTATATACCGTCGATTAATCCGCTCCAGTCGGAGCTTATTTTTGATAAAGCTCAAGGGGCTTCGTTTTAG
- Protein Sequence
- MVESGVLKTFTFLYSENHPYVDKNLEAMIEIIEELKAILMKVCAGIQPQNEPLLEHQNTYHILSSASIDTECVSTEENITFPRHTADEFSFNEIHNTIERNIQLIAETESRMCDDLDHSFSSQEITTSTLKSTEHTMFSECSSINSLLKEDQNDFLQDMRFNSTESQDSSIPETNPVHYSQHVQYSQQCENTLQNIDLDILNRSSESYQQPNYSERINPNFDRIFDDQFPENESLLESECWNDINLPSTEPITSGIEIQASPFELNNLKNKIGSNLDESLVSDLDSTLSSELSNTVSSVPAGYDINKEKHSDDFDQNKFFCEHCGNIFDTKLKLKIHLKRKHNVYVNNINRCDQCGKVFKRRAILLIHARIHSDIKPYKCPFCWKTFTQKITRDSHVQLHTGSYKFSCQVCEKRFPTQAKLNFHSKCHEKPELRCEICSKMFTTKQYLNLHKKVHFRPNPPRGKSFSCTECSVLFYKKRDLLMHIKDSHPEMKFMCYFAGCSLTYSTYKRMIDHVYKKHTMKSSCENDKKTDPNKLYCSSCRISFVEKSSFFRHNLLVHRENVDVENSFNCVHCDKRFTTESSLDDHLDKFHNLVHSKEMNYSCSICGSLFYAESALKEHYKIHSDYNTHLCQTCGMVFSEKDNFLLHQSVHDLKKDTSSKKFQCETCDSRFENKMELRQHELDVHNIVPSVEELKPYLCSYCDKRFTTKGKCNLHMETHGKERNYKCTKCDKRFFRRDLLKEHLKTHNGYRAHVCKICGLAYSQKSSLKTHEKTHEKVEESISCEQCQKIFHSKQALNFHLKTHDGVFRFACEVCGKKFNRKCHYDLHLASHSVERPFKCLKCPASYKTNKHLREHSKKMHQNEPNFSSLFDSTFTEDEVVSQQNLLDEYIPSINPLQSELIFDKAQGASF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150652;
- 90% Identity
- -
- 80% Identity
- -