Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:241100-248973[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.5 2.4e+02 2.0 0.6 3 23 117 137 115 137 0.94

2 15 0.14 7.4 6.7 0.3 2 23 141 163 140 163 0.93

3 15 0.21 11 6.2 0.3 2 23 389 411 388 411 0.96

4 15 0.0069 0.36 10.9 0.1 1 20 419 438 419 440 0.95

5 15 0.0039 0.2 11.6 0.5 2 23 450 471 449 471 0.94

6 15 0.77 40 4.4 0.1 2 14 618 630 617 640 0.81

7 15 1.8e-05 0.00092 19.0 1.1 1 23 674 696 674 696 0.97

8 15 5.8e-05 0.003 17.4 1.8 1 23 703 725 703 725 0.98

9 15 6e-05 0.0031 17.3 2.3 1 23 730 752 730 752 0.96

10 15 0.0014 0.074 13.0 1.6 1 23 758 780 758 780 0.98

11 15 1.7e-06 8.6e-05 22.2 1.5 1 23 786 808 786 808 0.97

12 15 0.0011 0.055 13.4 1.7 2 23 815 836 815 836 0.98

13 15 0.00019 0.0097 15.8 1.1 2 23 844 866 843 866 0.97

14 15 0.0016 0.085 12.8 1.0 1 23 871 893 871 893 0.96

15 15 0.94 49 4.1 5.8 1 23 899 922 899 922 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.5	2.4e+02	2.0	0.6	3	23	117	137	115	137	0.94
2	15	0.14	7.4	6.7	0.3	2	23	141	163	140	163	0.93
3	15	0.21	11	6.2	0.3	2	23	389	411	388	411	0.96
4	15	0.0069	0.36	10.9	0.1	1	20	419	438	419	440	0.95
5	15	0.0039	0.2	11.6	0.5	2	23	450	471	449	471	0.94
6	15	0.77	40	4.4	0.1	2	14	618	630	617	640	0.81
7	15	1.8e-05	0.00092	19.0	1.1	1	23	674	696	674	696	0.97
8	15	5.8e-05	0.003	17.4	1.8	1	23	703	725	703	725	0.98
9	15	6e-05	0.0031	17.3	2.3	1	23	730	752	730	752	0.96
10	15	0.0014	0.074	13.0	1.6	1	23	758	780	758	780	0.98
11	15	1.7e-06	8.6e-05	22.2	1.5	1	23	786	808	786	808	0.97
12	15	0.0011	0.055	13.4	1.7	2	23	815	836	815	836	0.98
13	15	0.00019	0.0097	15.8	1.1	2	23	844	866	843	866	0.97
14	15	0.0016	0.085	12.8	1.0	1	23	871	893	871	893	0.96
15	15	0.94	49	4.1	5.8	1	23	899	922	899	922	0.96

Sequence Information

Coding Sequence: ATGGTATCCGATGACTCCGATGATGAGCCCCTGTCAATTTTAGCTGCAGAGAAAAGATTACACCCAGAAAAATTCCCAGAACCCGAACATGAAGGCGCAAGTACCAGCATCGTTCCCAAAAAGAGACAGAGAAAATCACTGACGCCAAAAAAACTGGGaatcacaattaaaataagaaaacaaaggACATTTCCACTTCCTCCTGTGATAGAAAGACCAGCTGATGTTTGGCTCTATCTTAAAGACTTGAATCCTGCTGGTCCTTACAGCTGTTTACTATGTCCTGATTGGTTTATAAATCGATCAAAAATGATCATGCATTATGTGTTAAATCacaaaaaagatttttgtgGTATTTGTAGATATTTTGTACCAAACAGGGAGTTGTGGCATGaacatgtaaaatttcatacaCCTTGGCCGTGCTCCCAATGCATCGCAAACTTTCCCAACCAAGTTACATTACGCCATCATCTAAGCAGCGCTCACAAATTAGTACACTGTCGCTTATGTCACTTCCGTCTCCCTGACGATGACCAATACAATTGTCATCTGTTCCAAAAACACAGTGTTATAAATGTACTTAGTAAAGATGAAGAAGTGCTCTGGGATTTTGACTATGATGGTACTAcgaaatttttatgtttactctGTTCGAAGGGCAATAATCTAAGTTCTATGTTTTTCAAGCATTACATGGGTTACCATCATTTTACTATCAAGTGTTTAACCAGTTTACTTTCTGGTAGAGATTCACCGTTCACTGTTAATGGTGCTGATGTAAGTGCTCACTTTATTGATGGACAATTGCAAGGGCAAATTCGTTACGGTTATGTTGATTTGgataaaatatctttcaatGGAATTCAATTAGATGAACAAAATAAcgagaaatataaatacttaaaagcAGAAGTAAAACATGAAGATGCTACAGATGGTGAAGTAAGACAGAGTAGTAATAAAGAAACTAAAACTGAAGACGTAAATCAGAATTATAAAGGAGATGAAGATTTTGATGTAACTCATACAGAACTTTTAGTTTTAGAGAAGAGTTTTTTTGATTATGTAAAACGTACACTAcatgatataaataataatcaaatgcCTTTAAATTCTTTGATACAATATGAAGATGGTAAATCTGATATAACAAAGGAAATAGAATGTCCATTATGCAAATCGAAGTATGAAAATGTTCAAGCATTTTCATTGCATATGAATAAAATGCATTGCATTAAGTTCATCCCATCATATTCATGCAGAGTTTGTGCGACCACATTTGATACACTTAGTGAGCTAGAAACTCACACAGCTCTTGAAATGGAGAACTTCGAAGATCTTTGGATCTGTCAGTTTTGTGACAAAGAGTTTGACAACCGAGATGCGACAAGAAAGCATTTAACGGAGCACTGGCAGGTTATGGAATATGACAATTGTTTCAGCCCACACTTGGGTTTTAAATGCAGATTTTGTCCGATGCTGTTTTGGAACGAAACGGACCGTGAAGAACACCAAGTTAGAGAACATTTAGAGAAATATCGGGAtcagttttataaatgtattaactgTTTAGAACTGTTCAGTGAAAAAGTGTGGTTTATACATCATCATTTGGAGAAACACTCTGCTGATAAAATGGAAACATATCTAATAAAGTGCTGTTTATGCTGCATTGTCTTACCAAGCATTGAGGAGATGAGGAACCATTTCACTGAAGACCATCCGGAGGCTCGGAAAGTGTACTGTTCATTGGGTTCATGTCAATACAAACCTTTGAGTCATAGGAAGTCATTTAAACTGCATGTTAAgGCGATCCACAGTCCGTGCGCGCGGGCGGAGCGCGACGTGAAGTGCGCGGTGTGCGGGCGCGAGTTCGCGAGCGCGCGGGCGTGCGGCGCGCACGTGGCGCAGGTGCACGGCCCCGGCAAGTTCAAGTGCAAGCTGTGCCGCGACACGCTGCACACCACTGACGAGAGGAAGCTTCACTACCTACTACGTCATCCTGGACGCCACCCGTACGAGTGCGCGGACTGCGGCAAGTCGTTTCAGTACAAGTCCTCGTTGTACATGCACCGACAGGACCATATACCTAACAAGCAGACGTACACATGTAGTTACTGCTCGAAAGTTTTCATGAAAAAGGATTCGTTCCGCGAGCACGTGCAGATCCACGAGGGTCCGCGACACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCAGGCACACCGGCGAGCGCCCCTACGCCTGCCCGCACTGCGCGCGCACCTTCGCCGACAAGGGCGCCTGCAACTCGCACGTCAGaacACATTCCAAAGAAACATCATTCGCGTGCCTCTACTGCGGTCAGACATTTGTACAAAAGTCCAAACTAACCTATCATATAAGAAAACATACGGGAGAGAatCTGGAAACATGTCCTGTTtgttccaaattatttaccagCGGATGCTCGTTACGTGAACATATGAAGATACATGTGGccaagaaatatttaattaaatgtccaATGTGTGATAAAAAGTACCAGGACGAGCGGTACATGCTGCGACACCTACGCACGCGGCACGCGGGGGCGCAGCACGCCTGCCCGCTCTGCCACAAGCTGCTCACCAGCGCGCCCGGCCTGCGCCGCCATCTGCTCACACACAGCGCGCTGGACATCTTCCACTGCAAATGTTGTCCAAAATCCTACGCGATTCAGAGAACTATGATAAAACATCTACGCAGGCGCCACGGACTGAACGGCACTgagattaatattaaagatttcTTTAGAAGACTGGACCCTAGAGAGTGTCAACTGGGATTAGACGAAGAAACCATGGTCAATATATTCGGACCACCCAAGAAGGTTACATCAGTCTTAGGAGCGGATTTCGTGAATTTAGCTAATCTTTATAAGAAAGATGATGGAGGGAAAGAAGAACAAACAGACGATGATGATTCAGATGAAGCATCTTTACAAACACTTAGAAAGGAATATATGAATCGTGAAGGAGAAAGTAACAGAACGTTAGAGAATGTTACAATTAAACTGGAAACTATAACAACTGATGTATTGGAGCCAACTGATTTTGTCAGTGTTAAAATTGAACCATACGATGAAAACGAACATCAATAG
Protein Sequence: MVSDDSDDEPLSILAAEKRLHPEKFPEPEHEGASTSIVPKKRQRKSLTPKKLGITIKIRKQRTFPLPPVIERPADVWLYLKDLNPAGPYSCLLCPDWFINRSKMIMHYVLNHKKDFCGICRYFVPNRELWHEHVKFHTPWPCSQCIANFPNQVTLRHHLSSAHKLVHCRLCHFRLPDDDQYNCHLFQKHSVINVLSKDEEVLWDFDYDGTTKFLCLLCSKGNNLSSMFFKHYMGYHHFTIKCLTSLLSGRDSPFTVNGADVSAHFIDGQLQGQIRYGYVDLDKISFNGIQLDEQNNEKYKYLKAEVKHEDATDGEVRQSSNKETKTEDVNQNYKGDEDFDVTHTELLVLEKSFFDYVKRTLHDINNNQMPLNSLIQYEDGKSDITKEIECPLCKSKYENVQAFSLHMNKMHCIKFIPSYSCRVCATTFDTLSELETHTALEMENFEDLWICQFCDKEFDNRDATRKHLTEHWQVMEYDNCFSPHLGFKCRFCPMLFWNETDREEHQVREHLEKYRDQFYKCINCLELFSEKVWFIHHHLEKHSADKMETYLIKCCLCCIVLPSIEEMRNHFTEDHPEARKVYCSLGSCQYKPLSHRKSFKLHVKAIHSPCARAERDVKCAVCGREFASARACGAHVAQVHGPGKFKCKLCRDTLHTTDERKLHYLLRHPGRHPYECADCGKSFQYKSSLYMHRQDHIPNKQTYTCSYCSKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCARTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSGCSLREHMKIHVAKKYLIKCPMCDKKYQDERYMLRHLRTRHAGAQHACPLCHKLLTSAPGLRRHLLTHSALDIFHCKCCPKSYAIQRTMIKHLRRRHGLNGTEINIKDFFRRLDPRECQLGLDEETMVNIFGPPKKVTSVLGADFVNLANLYKKDDGGKEEQTDDDDSDEASLQTLRKEYMNREGESNRTLENVTIKLETITTDVLEPTDFVSVKIEPYDENEHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149129; iTF_01143359; iTF_01496001; iTF_01141929; iTF_01130254; iTF_01115919; iTF_01495251; iTF_00197620; iTF_01494548; iTF_00249946; iTF_01144819; iTF_01139185; iTF_01140433; iTF_01148446; iTF_01141207;
90% Identity: iTF_01149129;
80% Identity: -