Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01001526.1:2169-8842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.13 12 7.3 0.4 3 23 115 135 113 135 0.96

2 16 0.21 19 6.7 0.3 2 23 139 161 138 161 0.93

3 16 0.053 4.8 8.6 0.8 3 23 391 412 390 412 0.97

4 16 0.065 5.9 8.3 0.1 1 20 420 439 420 441 0.95

5 16 0.0069 0.62 11.4 0.5 2 23 451 472 450 472 0.94

6 16 0.0023 0.2 12.9 2.1 1 23 520 543 520 543 0.94

7 16 0.59 53 5.3 0.1 3 23 620 641 618 641 0.85

8 16 2.6e-05 0.0024 19.0 1.1 1 23 675 697 675 697 0.97

9 16 6.6e-06 0.0006 20.8 1.3 1 23 704 726 704 726 0.98

10 16 8.9e-05 0.0081 17.3 2.3 1 23 731 753 731 753 0.96

11 16 0.00021 0.019 16.1 1.6 1 23 759 781 759 781 0.98

12 16 2.5e-06 0.00022 22.2 1.5 1 23 787 809 787 809 0.97

13 16 0.00092 0.083 14.1 2.0 2 23 816 837 816 837 0.97

14 16 0.0004 0.036 15.3 0.9 2 23 845 867 844 867 0.97

15 16 0.0032 0.29 12.4 2.7 1 23 872 894 872 894 0.98

16 16 5.2 4.7e+02 2.3 7.3 1 23 900 923 900 923 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.13	12	7.3	0.4	3	23	115	135	113	135	0.96
2	16	0.21	19	6.7	0.3	2	23	139	161	138	161	0.93
3	16	0.053	4.8	8.6	0.8	3	23	391	412	390	412	0.97
4	16	0.065	5.9	8.3	0.1	1	20	420	439	420	441	0.95
5	16	0.0069	0.62	11.4	0.5	2	23	451	472	450	472	0.94
6	16	0.0023	0.2	12.9	2.1	1	23	520	543	520	543	0.94
7	16	0.59	53	5.3	0.1	3	23	620	641	618	641	0.85
8	16	2.6e-05	0.0024	19.0	1.1	1	23	675	697	675	697	0.97
9	16	6.6e-06	0.0006	20.8	1.3	1	23	704	726	704	726	0.98
10	16	8.9e-05	0.0081	17.3	2.3	1	23	731	753	731	753	0.96
11	16	0.00021	0.019	16.1	1.6	1	23	759	781	759	781	0.98
12	16	2.5e-06	0.00022	22.2	1.5	1	23	787	809	787	809	0.97
13	16	0.00092	0.083	14.1	2.0	2	23	816	837	816	837	0.97
14	16	0.0004	0.036	15.3	0.9	2	23	845	867	844	867	0.97
15	16	0.0032	0.29	12.4	2.7	1	23	872	894	872	894	0.98
16	16	5.2	4.7e+02	2.3	7.3	1	23	900	923	900	923	0.96

Sequence Information

Coding Sequence: atgtcgtcTGACGATTCTGATGACGAACCTCTGTCAGTTCTAGcagcagaaaaaaaattacacccAGAAAAATTCCCAGAACCTGTTGCTGAAGACGACGGAAAAGCTcctagaaaaagaaaaagaaagtcaCTTACGCCGAAAAAATTGGGATTACCTATTAAAGTAAGAAAGCAAAGAAGTTTACCTCCGCCGCCTGTGATTGAAAGACCCACAGATGTTTGGCTTTACCTAAAAGATTTAAATCCTGCAGGTCCTTATAGTTGCTTGTTATGCACTGATTGGTTCATCAATCGTACAAAAATGATTATGCACTATGTGTTGAATCATAAAAAAGATTTCTGTGGTATTTGCagatattttgttactaaCAGAGAAGCATGGCGTtcacatattaaatttcatataccATGGCCATGCTCTCAATGTATTGCAAACTTTCCTAATCAGGTTACATTACGTCACCACCTCAGCAGTGTACATAAACTGGTTCATTGTCGCCTTTGTCACTTCCGTTTACCGGAAGGTGACCAGTACAACACACATTTATTTCAGAAACATAACGTCACTAATGTTCTTAGTAAAGATGAAGAAGTCTTATGGGACTTCGACTATGAGGGGACTACTAAATTTCTATGTCTATTATGTTCTAAATCAAACAACCTTAgttcaacattttttaaacattatatggGCTTCCATCATTTTACTATAAAGTGTCTGACTACTATAATATCTGGTACAGATCCACCTTTTACTGTTAATGGCGCTGATGTCAGTTCTCACTTTATTGATGGACAATTACAAGGACAAATTCGATATGGTTATGTAGATTTAGACAAAAGGCCCTTTAATGCACTCAACCAATCGGAAGATAGTTCCATAGatgcttataattatttaaaaacagaaataaaacatgaagCAGGAAGTGACAATGAcagtaaagaaaacaattgtaaaaaagATAACAATGATGCAgataacatacataaaaattataaaggtgATGAAGATTTTGACGTTACATTAACAGAACTGATTGTACTAGAGAAATGTTACTTTGACTATGTCACTCAAACTCTCAATGCCATTAACTGCAATCAAATGCCCCAGAATTCTTTAATAGAATATGAAGATGGTAAATCTGACATTATAATGGATGTTGACTGTCCCTtatgtaaatcaaaatatgaaaatgcACAAACATTTACAATGCACATGAATAAGATGCACTGTGTAAAGTTGGTGCCTCTGTATTCATGCAGGGTTTGTGCAATGACATTTGACACTTACACTGAACTTGAGACTCACACAGGAGTAGAACTGGCaaattttgatgatttatGGATATGTCAGTTTTGTGATAAGGAGTTTGATAATAGAGAAGCAACAAGGAAACATCTTTCAGAACATTGGGAGTTAATGGAATATGACAACTGCTTCAGTCCACATCTGGGTTTCAAATGCAGATTTTGCCCAACCCTTTTCTGGAATGAAACAGATCGTGAACAGCATCAAGTGAGAGcacatttttctaaatataaggACCAATTTTATAAATGCGAAGGTTGTTCTGAAATATTCAGTGATaaggTATGGTTTATCCATCATCACCTGGAAAAGCACTTTGCAAATAAGATGACAACATATCTCTTAAAGTGTTGCTTATGTTGCATTGTATTACCGAATATTGATGATATGAGGAATCACTTTCATGATGAACACCCAGAATCTCGGAAAGTGTATTGTTCTTTGGATTCATGTCAATACAAACCATTGAGTCACAGGAAGTCATTTAAATTGCATGTAaagACGATCCATAATCCATCGGCGCGCGCCGAGAAGATTGTGAACTGTGCGGTGTGTGGACGAGAGTTTGCAAGCTCGCGCGCCTGCGGTGCTCACATGGCGCAGGTCCATGGGCCCGGCAAGTTCAAATGCAAACTGTGCAGAGATGTACTCCACACTATGGACGAGAGaaagttACATTACCTTCTGCGACACCCTGGCCGGCACCCATATGAGTGTGCGGATTGCGGGAAGTCGTTCCAGTACAAGTCTTCCTTATACATGCACCGGCAGGATCACATACCAAACAAGCAGACTTACACTTGTACTTACTGTGGCAAGGTTTTCATGaaaAAAGATTCGTTCCGGGAACATGTACAAATCCACGAGGGACCGCGACACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTCCGACACGAGCGCCGGCACACAGGCGAACGGCCGTACGCCTGCCCGCACTGCCCCCGCACCTTTGCGGACAAAGGCGCATGTAATTCACACGTCAGGACACATTCTAAGGAGACATCGTTTGCATGCCTCTACTGTGGACAGACATTTGTACAAAAATCAAAACTAACTTATCACATTAGAAAACACACTGGCGAgaACTTGGAAACATGCCAGGTCTGTTCCAAGATGTTTACAAGTGGTTGTGCCCTCCGTGAGCACATGAAGATACATGTAGAGAAGAAGGAACTAGTCAAATGTCCATTATGTGATAAGAAGTATCAGGACGAGCGCTATATGCTGCGCCATCTGCGCACGACGCACACGGGAGCACAACACACCTGCCCGCTGTGCCACAAGCTGCTCACCAGCCCCGCAGGGTTGCGCCATCATGTGCTGACCCACAGCGCTGTCAACCTTTTTCATTGTAAATGTTGCCAGAAATCTTATGCAATCAAAAGAACTATGATAAAACACCTTCGCAGGCGTCATGGTTTAAAaggaacagaaataaatataaaagacttCTTCAAACGCTTAGATCCAAGAGAGTGCCAATTGGGGCTAGACGAAGACACGATGCTCAGCGTTTTTGGGCCACCGAAGAAAGTTATGACTGATGTCTTGCTGGCAGATTATGTGAACATGCCtgacaattataaaaaaaacaaagagacCGTTCAGGACGACGAAGACACTGAAGACGAGAACTGTGAAGACAATGGAGAAGATGAACAATCTAGTGAAGGATCTGAAGACAAATTTAGAAAAGACTCAGACGATCAAGATGAATCTAATGATGGTAAGACAGAGATTGAAAAAGTAAGTATTAAACAGGAATCTGTCACGGCTGAAGTTGAATTGGAACCGACAGATTTTGTTAGTGTTAAGATTGAACCTTACGATGAAAATGATTCGAAATAA
Protein Sequence: MSSDDSDDEPLSVLAAEKKLHPEKFPEPVAEDDGKAPRKRKRKSLTPKKLGLPIKVRKQRSLPPPPVIERPTDVWLYLKDLNPAGPYSCLLCTDWFINRTKMIMHYVLNHKKDFCGICRYFVTNREAWRSHIKFHIPWPCSQCIANFPNQVTLRHHLSSVHKLVHCRLCHFRLPEGDQYNTHLFQKHNVTNVLSKDEEVLWDFDYEGTTKFLCLLCSKSNNLSSTFFKHYMGFHHFTIKCLTTIISGTDPPFTVNGADVSSHFIDGQLQGQIRYGYVDLDKRPFNALNQSEDSSIDAYNYLKTEIKHEAGSDNDSKENNCKKDNNDADNIHKNYKGDEDFDVTLTELIVLEKCYFDYVTQTLNAINCNQMPQNSLIEYEDGKSDIIMDVDCPLCKSKYENAQTFTMHMNKMHCVKLVPLYSCRVCAMTFDTYTELETHTGVELANFDDLWICQFCDKEFDNREATRKHLSEHWELMEYDNCFSPHLGFKCRFCPTLFWNETDREQHQVRAHFSKYKDQFYKCEGCSEIFSDKVWFIHHHLEKHFANKMTTYLLKCCLCCIVLPNIDDMRNHFHDEHPESRKVYCSLDSCQYKPLSHRKSFKLHVKTIHNPSARAEKIVNCAVCGREFASSRACGAHMAQVHGPGKFKCKLCRDVLHTMDERKLHYLLRHPGRHPYECADCGKSFQYKSSLYMHRQDHIPNKQTYTCTYCGKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGENLETCQVCSKMFTSGCALREHMKIHVEKKELVKCPLCDKKYQDERYMLRHLRTTHTGAQHTCPLCHKLLTSPAGLRHHVLTHSAVNLFHCKCCQKSYAIKRTMIKHLRRRHGLKGTEINIKDFFKRLDPRECQLGLDEDTMLSVFGPPKKVMTDVLLADYVNMPDNYKKNKETVQDDEDTEDENCEDNGEDEQSSEGSEDKFRKDSDDQDESNDGKTEIEKVSIKQESVTAEVELEPTDFVSVKIEPYDENDSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147680;
90% Identity: iTF_00249946;
80% Identity: -