Basic Information

Insect: Papilio glaucus
Gene Symbol: -
Assembly: None
Location: scaffold:205229-214215[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.7 1e+02 3.5 0.4 3 23 117 137 115 137 0.95

2 16 0.16 10 6.6 0.3 2 23 141 163 140 163 0.93

3 16 0.041 2.5 8.5 0.8 3 23 393 414 392 414 0.97

4 16 0.0067 0.41 11.0 0.0 1 20 422 441 422 442 0.95

5 16 0.0044 0.27 11.6 0.5 2 23 453 474 452 474 0.94

6 16 0.01 0.63 10.4 3.3 1 23 522 545 522 545 0.94

7 16 0.45 28 5.3 0.1 3 23 622 643 620 643 0.85

8 16 2.7e-05 0.0016 18.6 1.2 1 23 677 699 677 699 0.97

9 16 4.5e-05 0.0027 17.9 1.9 1 23 706 728 706 728 0.98

10 16 6.8e-05 0.0042 17.3 2.3 1 23 733 755 733 755 0.96

11 16 0.00016 0.0099 16.1 1.6 1 23 761 783 761 783 0.98

12 16 1.9e-06 0.00012 22.2 1.5 1 23 789 811 789 811 0.97

13 16 0.0013 0.078 13.3 1.1 2 23 818 839 818 839 0.98

14 16 0.0003 0.019 15.2 0.9 2 23 847 869 846 869 0.97

15 16 0.0072 0.44 10.9 2.0 1 23 874 896 874 896 0.96

16 16 2.8 1.7e+02 2.8 7.2 1 23 902 925 902 925 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.7	1e+02	3.5	0.4	3	23	117	137	115	137	0.95
2	16	0.16	10	6.6	0.3	2	23	141	163	140	163	0.93
3	16	0.041	2.5	8.5	0.8	3	23	393	414	392	414	0.97
4	16	0.0067	0.41	11.0	0.0	1	20	422	441	422	442	0.95
5	16	0.0044	0.27	11.6	0.5	2	23	453	474	452	474	0.94
6	16	0.01	0.63	10.4	3.3	1	23	522	545	522	545	0.94
7	16	0.45	28	5.3	0.1	3	23	622	643	620	643	0.85
8	16	2.7e-05	0.0016	18.6	1.2	1	23	677	699	677	699	0.97
9	16	4.5e-05	0.0027	17.9	1.9	1	23	706	728	706	728	0.98
10	16	6.8e-05	0.0042	17.3	2.3	1	23	733	755	733	755	0.96
11	16	0.00016	0.0099	16.1	1.6	1	23	761	783	761	783	0.98
12	16	1.9e-06	0.00012	22.2	1.5	1	23	789	811	789	811	0.97
13	16	0.0013	0.078	13.3	1.1	2	23	818	839	818	839	0.98
14	16	0.0003	0.019	15.2	0.9	2	23	847	869	846	869	0.97
15	16	0.0072	0.44	10.9	2.0	1	23	874	896	874	896	0.96
16	16	2.8	1.7e+02	2.8	7.2	1	23	902	925	902	925	0.96

Sequence Information

Coding Sequence: ATGCTGTCTGATGATTCCGATGATGAGCCCTTATCAGTTTTAGCTGCAGAGAAAAGGTTACACCCCGAAAAATTCCTTGAGTTCGAGCCCGAAATTGAAGACTCCAACATATTGCCCAAGAAAAGGAAGAGAAAATCACTAACGCCGAAGAAATTGGGTATCACCATTAAAATAAGAAAACAAAGAACTTTACCGCCTCCACCGGTGATAGAACGACCAGCTGATGTTTGGCTGTATCTGAAAGATCTGAATCCTGCTGGTCCTTACAGCTGTTTATTATGCACGGATTGGTTTATTAATCGATCCAAAATGATAATGCACTATGTGTTGAACCACAAAAAAGATTTTTGTGGTATTTGTAGATATTTTGTTCCGGACAGAGAGTCATGGCATGCCCATGTCAAATTTCACATACCTTGGCCATGCTCACAATGCATTGCAAATTTTCCTAATCAAGTTACTTTGCGCCATCATCTTAGCAGTGTTCACAAACTTGTTCACTGTCGCCTTTGCCATTTCCGTGTACCCGATGATGACCAATATAATACACATCTTTGCCAAAAACACAATGTGACTAATGTACTTAGTAAAGACGAAGAAGTGCTGTGGGATTTTGATTATGAAGGCACAACAAAATTCTTATGCTTACTCTGTTCGAAGGCAAACAATCTGAGTTCAACATTTTTCAAGCACTATATGGGTTACCATCATTTCACCATCAAGTGCCTGACAGCTTTAGTCTCTGGTAGAGATCCACCATTCACTGTTAATGGTGCAGATGTCAGTACTCACTTTATTGATGGTCAGTTGCAAGGGCAAATACGTTATGGTTATGTTGATTTAGATAAAACACCATTCAATGCTCTAAAACAGTTAGAAGATCAAACCAGTGAGAATTATAATTATTTAAAAGGTGAGGTAAAACAAGAAGTTGGTAGCGATGGTGAGCTGAGGGGACAGGGTTCTAATAAAGAAAGTAAAATTGATGACTATGTTCATAAAAATTATAAAGGTGATGAAGATTTTGATGTGACTCTTACAGAACTCATAGTTCTAGAGAAGTGTTATTTTGATTATGTTAATCGTACGCTCAGTGATATAAACAGCAACCAAATGCCTTTGAACTCTTTAATAGAATATGAAGATGGTAAATCTGATATTATAATGGATGTTGATTGTCCATTATGCAAATCGAAGTATGAAAATGCCCAAACATTCACTATGCATATGAACAAAATGCATTGTGTTAAGTTAGTTCCATTATATTCATGCAGAGTTTGTGCAACTACATTTGACACACCGAGTGAGCTTGAAATGCACACAGGTCTTGAACTGGGGAACTTTGAAGACCTTTGGATCTGTCAATTTTGTGACAAAGAGTTTGACAACAGGGATGCCACAAGGAAGCATCTAACTGAGCACTGGGAGATTATGGAATATGACAATTGCTTCAGCCCACACTTGGGATTCAAATGCAGATTTTGTCCGACACTATTTTGGAATGAAACCGACCGTGAACAGCACCAAGTGAGAGCACATTTTGAAAAGTATCAGGATCAGTTTTATAAATGTGAAAGTTGTTCAGAAATGTTTAGCGACAAAGTGTGGTTTATACATCATCATCTGGAGAAACACTTTGTAAACAAGATGACAACTTACCTCATGAAGTGCTGCCTGTGCTGCATTGTCTTACCCAACATAGATGAAATGAGGCATCATTTTGGAGAGGAACACCCGGAGGCTAGGAAAGTTTACTGTTCCTTGGACTCATGCCAATACAAGCCTCTCAGTCACAGGAAGTCATTTAAACTACATGTAAAGACGATCCACAACCCGTCAGCGCGCGCCGAAAAGGTTGTGAACTGTGCGGTGTGCGGCCGTGAGTTCGCGAGCTCGAGGGCGTGCGGTGCGCATATGGCGCAAGTGCACGGCCCCGGCAAGTTCAAGTGCAAACTCTGTAGAGACGTGCTGCATACCATGGACGAGAGGAAGCTGCATTACCTCCTACGTCATCCAGGCAGGCACCCATACGAGTGCGTTGACTGCGGGAAGTCATTCCAGTATAAGTCTTCGCTGTACATGCACCGGCAGGACCACATACCCAACAAGCAGACTTACACCTGCAACTACTGCTCGAAAGTTTTCATGAAAAAGGACTCGTTCCGCGAGCACGTTCAAATCCACGAAGGACCAAGGCACGCGTGCTCGTACTGCCCGATGCGGTTTGTGCAGCGCTCTAACATGCTGCGCCACGAGCGCCGCCATACTGGCGAGCGGCCCTACGCCTGCCCGCATTGCCCGCGCACCTTTGCTGACAAGGGCGCATGCAACTCGCACGTCAGAACACATTCCAAGGAAACATCATTCGCGTGCCTCTATTGCGGTCAGACGTTTGTTCAAAAGTCTAAACTTACCTATCACATCAGAAAACATACAGGAGAGAATTTGGAAACTTGTCCTGTATGCTCTAAGCTGTTCACGAGCGGTTGCGCGCTGCGTGAACACATGAAAATACATGTCGAGAAGAAGGAGCTTGTAAAATGTCCTCTTTGTGACAAGAAGTACCAGGACGAGCGGTACATGCTACGTCACCTGCGCACGACGCACGCGGGCGCGCAGCACGCCTGCCCGCTGTGCCACAAGCTACTCACCAGCGCCGCTGGCCTGCGCCACCACGTGCTCACACACAGCGCCATCAACATGTTCCACTGCAAATGCTGTCAAAAATCCTATGCTATCAAGAGAACTATGATAAGACACCTGCGCAGGCGTCACGGACTGAAGGGTACGGAGATCAACATAAAGGACTTCTTCAAACGGCTCGATCCCAGAGAATGCCAGCTAGGTTTGGACGAAGATACGATGTTGAGCATTTTTGGACCACCCAAGAAAGTGATGGCCGATGTCTTACTAGCCGATTACGTGAATTTGGCCAACCTTTATAAAAAGAAAAGAAAGCCTGCAGATGGTGAAGCAGAAAATGAACAAACCGAAGAAGATAATGCAGAAGAGAACAATGGTGAGGATGAAGAATCTGATGAAGCAACTGAACATATACATGAAAAAGACTATGAAAATCGTGATGAAGGTGTAAGTAACACAACAATAGAGAATGTTACTATTAAACAAGAAACAATGACAACTGAAGTTGAATTAGAACCAACTGATTTTGTTAGTGTCAAAATTGAACCTTACGACGAAAATGATAGCGAATCGAAAAAACATTTTAGTTTTTAA
Protein Sequence: MLSDDSDDEPLSVLAAEKRLHPEKFLEFEPEIEDSNILPKKRKRKSLTPKKLGITIKIRKQRTLPPPPVIERPADVWLYLKDLNPAGPYSCLLCTDWFINRSKMIMHYVLNHKKDFCGICRYFVPDRESWHAHVKFHIPWPCSQCIANFPNQVTLRHHLSSVHKLVHCRLCHFRVPDDDQYNTHLCQKHNVTNVLSKDEEVLWDFDYEGTTKFLCLLCSKANNLSSTFFKHYMGYHHFTIKCLTALVSGRDPPFTVNGADVSTHFIDGQLQGQIRYGYVDLDKTPFNALKQLEDQTSENYNYLKGEVKQEVGSDGELRGQGSNKESKIDDYVHKNYKGDEDFDVTLTELIVLEKCYFDYVNRTLSDINSNQMPLNSLIEYEDGKSDIIMDVDCPLCKSKYENAQTFTMHMNKMHCVKLVPLYSCRVCATTFDTPSELEMHTGLELGNFEDLWICQFCDKEFDNRDATRKHLTEHWEIMEYDNCFSPHLGFKCRFCPTLFWNETDREQHQVRAHFEKYQDQFYKCESCSEMFSDKVWFIHHHLEKHFVNKMTTYLMKCCLCCIVLPNIDEMRHHFGEEHPEARKVYCSLDSCQYKPLSHRKSFKLHVKTIHNPSARAEKVVNCAVCGREFASSRACGAHMAQVHGPGKFKCKLCRDVLHTMDERKLHYLLRHPGRHPYECVDCGKSFQYKSSLYMHRQDHIPNKQTYTCNYCSKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSGCALREHMKIHVEKKELVKCPLCDKKYQDERYMLRHLRTTHAGAQHACPLCHKLLTSAAGLRHHVLTHSAINMFHCKCCQKSYAIKRTMIRHLRRRHGLKGTEINIKDFFKRLDPRECQLGLDEDTMLSIFGPPKKVMADVLLADYVNLANLYKKKRKPADGEAENEQTEEDNAEENNGEDEESDEATEHIHEKDYENRDEGVSNTTIENVTIKQETMTTEVELEPTDFVSVKIEPYDENDSESKKHFSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147680;
90% Identity: iTF_01141929;
80% Identity: -