Pmem020755.2
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000007.1:3340611-3349752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.4e-05 0.0064 17.2 0.1 3 23 127 147 126 147 0.97 2 18 6.7e-07 5.8e-05 23.6 1.2 1 23 153 175 153 175 0.99 3 18 4.2e-06 0.00036 21.1 2.7 1 23 181 203 181 203 0.99 4 18 2.2e-05 0.0019 18.9 4.3 1 23 218 240 218 240 0.98 5 18 0.00012 0.01 16.6 0.6 1 23 255 277 255 277 0.98 6 18 3.8e-05 0.0033 18.1 3.1 1 23 292 314 292 314 0.98 7 18 1.7e-05 0.0015 19.2 0.8 1 23 329 351 329 351 0.99 8 18 2.7e-05 0.0024 18.6 0.1 1 23 358 380 358 380 0.99 9 18 8.4e-06 0.00072 20.2 2.1 1 23 386 408 386 408 0.99 10 18 0.027 2.3 9.2 1.8 1 23 415 437 415 437 0.98 11 18 4.5e-07 3.9e-05 24.2 2.3 1 23 443 465 443 465 0.99 12 18 0.031 2.7 9.0 1.8 1 23 472 494 472 494 0.98 13 18 1.8e-06 0.00016 22.3 1.5 1 23 500 522 500 522 0.99 14 18 8.1e-05 0.007 17.1 0.8 1 23 529 551 529 551 0.99 15 18 2.6e-06 0.00023 21.8 2.2 1 23 557 579 557 579 0.98 16 18 0.0015 0.13 13.1 0.3 1 20 585 604 585 607 0.93 17 18 3.5e-05 0.003 18.2 1.2 2 23 614 635 613 635 0.96 18 18 2.6e-06 0.00023 21.8 1.4 1 23 641 664 641 664 0.97
Sequence Information
- Coding Sequence
- ATGTTCGAACAACAGATCAAAGCTGAACCTATGAGCTTCTACACCCCCCATTCACATCACTCAGGACCCCCTACAATAATGCGTTCAGATTCAAATCATGGTGTGATCAACATGAACCAGCATCATCATCAGGAAGATTCCAAAGACAGTCTCATCATACAGCAACAAGTACAACACCAGGAGATGCTGGAGCAGCACCAGCAACAGGACTTGCAACAAGATGATGAGTTGAGCTTTAAAGGCATGGACGATGATGGGGTCGATATGGATATGGATGGACGACAATGTTCACAGGGCATGGGTGTGGACATGGATTCCGTTCAAACTAAAATGGAGGTGACCAATGGTGGACAATTACCAAGATCTAAGCCTCAAGCCTGTAAGGTTTGTGGCAAAGTTTTGTCATCGGCATCTTCATATTACGTTCATATGAAGCTTCACTCTGGAAATAAACCTTTTCAGTGTACGGTTTGCGACgcggcgttctgccgcaagccgtacctggaggtgcacatgcgcacgcacacgggcgagcggcccttccaatgcgacctctgcctcaagcgcttcactcagaagtccagcctcaacacgcacaagcgcgtacacacggatgagcacatgcgcgcgttgttggcgaacgagcggccccacaagtgcgaactctgtcagatgcgcttcacgcagagctccagcctcaaccgacacaagaaaatacacacggAGGAACACAAACGCGCGCTGCTGGCTAAGGACCGCCCCTACCAGTGCGGCGTCTGCTTTGTGCGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGGAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcacacagaaatccagcctgggccgacacggaaagatacataccgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagtggttcacgcagaagtccagcctgggcactcataaacgcatacacaccgtgcaagggcgtccttacacgtgcgggcaatgcccggcggccttcgcacgccgcccctacctggactctcacatgcgcacgcacacaggcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataaacggacgcacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcggccgtatcagtgcgacatctgcctgaagcgcttcacgcagaagtccagtctcaacatccacaaacgaacgcactcagtgcagggccggcccttccagtgcctgcagtgccccgccgccttcacctgcaagcagtacctcgagatacacaaccgcacgcacaccggcgagcggccctaccagtgcgacgtctgtctcaagagattcgctcaaaagtcaacactcaatatacacaaacgaacgcacacagtgcaagggcggccgtatcagtgcacggagtgccccgccgcgttcacgtgcaagccctacctggagatacacatgcgcacgcacaccggcgagcgccccttcgagtgcgacatctgttacaaacgcttcacgcagaaatccacgctcaacattcacaagcgcctccacaccgGTGAACGTCCATACGCATGTGATATATGTCAAAAACGATTTGCTGTGAAGAGTTATGTAACAGCGCATAGGTGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGCTGACGTTCACCTCCAAGTCCCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGCCGCCTGCTACGAGTGCAGCGTCTGCGGACGCACCTTCGTACGCGACAGCTATCTCATACGGCATCACAACCGCGTGCACCGCGACAACCACAGCAACATGTCGGCGAACAGCATCAGCAACATGGCCGCCAACGCTAACAACTCTAACAATTTCGACACTTCCGGCGTTTGTGACTTAAGTTTCGTGCCGATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACTCCAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATGTCTTCGCCCCCTCCCCCGCACACGCCGACCCCGCAGCCCATGTCCGTGCAGATGCGCCTCACTGACTGA
- Protein Sequence
- MFEQQIKAEPMSFYTPHSHHSGPPTIMRSDSNHGVINMNQHHHQEDSKDSLIIQQQVQHQEMLEQHQQQDLQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMDSVQTKMEVTNGGQLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLANERPHKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKWFTQKSSLGTHKRIHTVQGRPYTCGQCPAAFARRPYLDSHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHMRTHTGERPFECDICYKRFTQKSTLNIHKRLHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSLTFTSKSQFALHIRTHSAAACYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSISNMAANANNSNNFDTSGVCDLSFVPMVNRYMTSQGTQVSMQDSSKMSAMSPQSIASMSSPPPPHTPTPQPMSVQMRLTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010401;
- 90% Identity
- iTF_01148986; iTF_01141833; iTF_01141832; iTF_01148251; iTF_01149757; iTF_01495189; iTF_01141078; iTF_01142539; iTF_01144702;
- 80% Identity
- -