Pdem000383.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000001.1:4609253-4617702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.1e-05 0.0078 17.2 0.1 3 23 129 149 128 149 0.97 2 19 7.3e-07 7.1e-05 23.6 1.2 1 23 155 177 155 177 0.99 3 19 4.6e-06 0.00044 21.1 2.7 1 23 183 205 183 205 0.99 4 19 2.5e-05 0.0024 18.8 4.4 1 23 220 242 220 242 0.98 5 19 7.3e-05 0.007 17.3 0.6 1 23 257 279 257 279 0.98 6 19 4.2e-05 0.004 18.1 3.1 1 23 294 316 294 316 0.98 7 19 1.9e-05 0.0018 19.1 0.8 1 23 331 353 331 353 0.99 8 19 0.00013 0.012 16.5 2.8 1 23 359 381 359 381 0.98 9 19 3e-05 0.0029 18.5 0.1 1 23 388 410 388 410 0.99 10 19 9.1e-06 0.00088 20.1 2.1 1 23 416 438 416 438 0.99 11 19 0.029 2.9 9.1 1.8 1 23 445 467 445 467 0.98 12 19 4.9e-07 4.8e-05 24.1 2.3 1 23 473 495 473 495 0.99 13 19 0.034 3.3 8.9 1.8 1 23 502 524 502 524 0.98 14 19 2e-06 0.00019 22.2 1.5 1 23 530 552 530 552 0.99 15 19 0.00038 0.037 15.0 0.7 1 23 559 581 559 581 0.99 16 19 4.2e-06 0.0004 21.2 2.7 1 23 587 609 587 609 0.98 17 19 0.0016 0.16 13.1 0.3 1 20 615 634 615 637 0.93 18 19 3.8e-05 0.0037 18.2 1.2 2 23 644 665 643 665 0.96 19 19 2.9e-06 0.00028 21.7 1.4 1 23 671 694 671 694 0.97
Sequence Information
- Coding Sequence
- ATGTTCGAACAACAGATCAAAGCTGAACCCATgagctTCTACACCCCCCATTCACATCACTCAGGACCCCCTACAATAATCCGATCAGACTCAAACCATGGTGTGATCAACATGAACCAGCATCACCATCAGGAAGATTCCAAAGACAGTCTCATTATACAGCAACAAGTACAACACCAGGAAATGTTGGACCAGCACCAACAGCAGCAGGATCTGCAGGCACAAGATGATGAGttGAGCTTTAAAGGCATGGATGATGAAGGGGTTGATTTGGATATGGATGGTCGACAATGTTCACAGagcATGGGTGTGGATATGGATTCAGTTCAAACTAAAATGGAGGTGACTAATGGTGGACAATTACCAAGATCTAAGCCTCAGGCCTGTAAGGTTTGTGGCAAAGTTTTGTCATCAGCATCTTCATATTATGTTCATATGAAGCTCCACTCTGGAAATAAACCTTTTCAGTGTACGGTTTGCGACGCGGCATTCTGTCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACCGGCGAGCGACCCTTCCAATGCGACCTCTGTCTCAAACGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGCGTACACACTGATGAGCACATGCGCGCGTTGTTGGCGAACGAGCGGCCCCACAAGTGCGATCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGCGCGCTGCTGGCTAAGGAACGCCCCTACCAGTGCGGCATCTGCTTTGTTCGATTCACCCAGAAATCGAGTTTGGGTCGGCACGGGAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACATACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGTGGTTCACGCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCCCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTACACGTGCGGGCAATGCCCGGCGGCCTTCGCACGCCGCCCCTACCTGGACTCTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGAACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGGGAGCGGCCATACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCAACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCCGCCGCGTTCACGTGCAAGCCCTACCTGGAGATACACATGCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCGACGTCTGTTACAAGCGCTTCACGCAGAAGTCCACCCTCAACATACACAAGCGCCTCCACACCGGTGAACGTCCATATGCATGTGATATATGTCAGAAAAGATTTGCTGTGAAGAGTTATGTAACAGCACACAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAACGGTGCTCGCTGACGTTCACGTCCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGCCGCCTGCTACGAGTGCAGCGTCTGCGGACGCACCTTCGTGCGGGACAGCTATCTCATACGACATCACAACCGCGTGCACCGCGACAACCACAGCAACATGTCTGCGAACAGCATCGGCAACATGACCGCCAATAACGCCAACAACTCTAATAATTTCGACACTTCCGGAGTTTGTGACTTAAGTTTCGTGCCGATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCCATGCAGGACTCCAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATATCGTCGCCTCCTCCCCCTCACACACCGACCCCGCAGCCCATGTCCGTGCCCATGCGGCTCGCCGACTGA
- Protein Sequence
- MFEQQIKAEPMSFYTPHSHHSGPPTIIRSDSNHGVINMNQHHHQEDSKDSLIIQQQVQHQEMLDQHQQQQDLQAQDDELSFKGMDDEGVDLDMDGRQCSQSMGVDMDSVQTKMEVTNGGQLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLANERPHKCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKWFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGQCPAAFARRPYLDSHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFQCDVCYKRFTQKSTLNIHKRLHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSLTFTSKSQFALHIRTHSAAACYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGNMTANNANNSNNFDTSGVCDLSFVPMVNRYMTSQGTQVSMQDSSKMSAMSPQSIASISSPPPPHTPTPQPMSVPMRLAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010401;
- 90% Identity
- iTF_01145411;
- 80% Identity
- -