Ppol022359.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polyxenes
Gene Symbol
-
Assembly
GCA_026167825.1
Location
JAOPJD010000007.1:3899437-3907946[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.1e-05 0.0072 17.2 0.1 3 23 129 149 128 149 0.97
2 18 7.4e-07 6.5e-05 23.6 1.2 1 23 155 177 155 177 0.99
3 18 4.6e-06 0.00041 21.1 2.7 1 23 183 205 183 205 0.99
4 18 2.4e-05 0.0021 18.9 4.3 1 23 220 242 220 242 0.98
5 18 0.00013 0.012 16.5 0.6 1 23 257 279 257 279 0.98
6 18 4.2e-05 0.0037 18.1 3.1 1 23 294 316 294 316 0.98
7 18 1.9e-05 0.0017 19.2 0.8 1 23 331 353 331 353 0.99
8 18 0.00013 0.011 16.6 2.8 1 23 359 381 359 381 0.98
9 18 9.2e-06 0.00081 20.2 2.1 1 23 387 409 387 409 0.99
10 18 0.03 2.6 9.1 1.8 1 23 416 438 416 438 0.98
11 18 5e-07 4.4e-05 24.2 2.3 1 23 444 466 444 466 0.99
12 18 0.034 3 8.9 1.8 1 23 473 495 473 495 0.98
13 18 2e-06 0.00018 22.3 1.5 1 23 501 523 501 523 0.99
14 18 0.00038 0.034 15.1 0.7 1 23 530 552 530 552 0.99
15 18 5.2e-06 0.00046 21.0 2.2 1 23 558 580 558 580 0.98
16 18 0.0016 0.14 13.1 0.3 1 20 586 605 586 608 0.93
17 18 3.8e-05 0.0034 18.2 1.2 2 23 615 636 614 636 0.96
18 18 2.9e-06 0.00026 21.8 1.4 1 23 642 665 642 665 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATCAAAGCTGAACCTATGAGCTTCTATACCCCCCATTCACATCACTCAGGACCCCCAACAATAATCCGTTCAGACTCAAACCATGGTGTGATCAATATGAACCAGCATCACCATCAGGAAGATTCCAAAGACAGTCTCATAATACAGCAACAAGTACAACACCAGGAGATGCTTGAGCAACACCAACAGCAACAGGATTTGCAAGCACAAGATGACGAGTTAAGCTTTAAAGGTATGGATGATGAAGGGGTTGATATGGATATGGATGGTCAACAATGTTCACAGGGCATGGGAGTGGACATGGATTCAGTTCAAACTAAAATGGAGGTGACCAATGGTGGACAATTACCAAGATCTAAGCCTCAAGCCTGTAAGGTTTGTGGCAAAGTTTTGTCTTCAGCATCTTCATATTATGTTCATATGAAGCTTCATTCTGGAAATAAACCTTTTCAGTGTACGGTTTGCGACgcggcattctgtcgcaagccatacctggaggtgcacatgcgcacgcacacaggcgagcggccattccaatgcgacctctgcctcaagcgcttcacgcagaagtccagtctcaacacgcacaaacgcgtacacactgATGAGcacatgcgcgcgttgttggcgaacgagcggccccacaagtgcgaactctgtcagatgcgcttcacgcagagctccagcctcaaccgacacaagaaaatacacacggAGGAAcacaaacgcgcgctgctggctaaggaacgcccctaccagtgcggcgtctgctttgtgcgattcacccagaaatcgagtttgggccggcacgggaaaatacataccgAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgacacggaaagatacataccgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcagtgcgacatctgtgacaagtggttcacgcagaagtccagcctgggcactcataaacgtatacacaccggcgagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaagatacatacgggcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataaacggacgcacacagtccagggcagaccgttccagtgcctctcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcggccgtatcagtgcgacatctgcctgaagcgcttcacgcagaagtccagtctcaacatccacaagcgaacgcactcagtgcagggccggcccttccagtgtctgcagtgtcccgccgccttcacctgcaagcagtacctcgagatacacaaccgcacgcacaccggcgagcggccctaccagtgcgacgtctgcctcaagagattcgctcaaaagtcaacactcaatatacacaaacgaacgcacacagtacaagggcggccgtatcagtgcatggagtgtcccgccgcgttcacgtgcaagccctacctggagatacacatgcgcacgcacaccggcgagcgccccttcgagtgcgacgtctgttacaaacgcttcacacagaagtccacgctcaacatacacaagcgtctccacaccgGTGAACGTCCATATGCATGTGATATATGTCAGAAACGATTTGCTGTGAAGAGTTATGTAACAGCACATAGGTGGTCGCACGTGGCGGACAAGCCGCTAAACTGCGAACGATGCTCGCTGACATTCACGTCCAAATCTCAGTTCGCGCTGCACATCCGCACGCACTCAGCCGCCGCCTGCTACGAGTGCAGCGTCTGCGGACGGACATTCGTACGCGACAGTTATCTCATACGGCATCACAACCGCGTGCACCGAGATAACCACAGCAACATGTCTGCGAACAGCATTGGCAACATGGCCGCCAACAACGCCAACAACTCTAACAACTTCGACACCTCCGGCGTTTGTGACTTAAGTTTCGTGCCAATGGTGAACCGCTACATGACGTCACAAGGTACACAGGTGTCGATGCAGGACTCCAACAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATATCGTCGCCCCCTCCCCCGCACACGCCGACCCCGCAGCCAATGTCCCCAATGTCCGTACCCATGCGTCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTPHSHHSGPPTIIRSDSNHGVINMNQHHHQEDSKDSLIIQQQVQHQEMLEQHQQQQDLQAQDDELSFKGMDDEGVDMDMDGQQCSQGMGVDMDSVQTKMEVTNGGQLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLANERPHKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKWFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRLHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSLTFTSKSQFALHIRTHSAAACYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGNMAANNANNSNNFDTSGVCDLSFVPMVNRYMTSQGTQVSMQDSNKMSAMSPQSIASISSPPPPHTPTPQPMSPMSVPMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01145411;
80% Identity
-