Basic Information

Insect: Papilio machaon
Gene Symbol: -
Assembly: GCA_001298355.1
Location: NW:637152-640250[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0014 0.077 13.1 2.1 1 23 188 210 188 210 0.99

2 14 1.8e-05 0.00095 19.1 1.3 1 23 216 239 216 239 0.96

3 14 3.8e-05 0.002 18.1 0.4 1 23 245 267 245 267 0.98

4 14 1.4e-07 7.7e-06 25.7 2.7 1 23 273 295 273 295 0.99

5 14 7.1e-06 0.00038 20.4 4.6 1 23 301 323 301 323 0.98

6 14 3.6e-07 1.9e-05 24.4 1.8 1 23 329 352 329 352 0.95

7 14 9.9e-07 5.3e-05 23.1 1.4 1 23 358 380 358 380 0.98

8 14 4.1e-05 0.0022 18.0 2.1 1 23 386 408 386 408 0.98

9 14 0.00015 0.008 16.2 1.6 1 23 414 436 414 436 0.99

10 14 7.5e-08 4e-06 26.6 0.7 1 23 442 464 442 464 0.98

11 14 6.5e-07 3.5e-05 23.6 1.3 1 23 470 492 470 492 0.98

12 14 0.05 2.7 8.3 2.9 1 23 498 517 498 517 0.95

13 14 1.1e-06 5.9e-05 22.9 0.9 1 23 523 545 523 545 0.98

14 14 9.8e-05 0.0052 16.8 4.6 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0014	0.077	13.1	2.1	1	23	188	210	188	210	0.99
2	14	1.8e-05	0.00095	19.1	1.3	1	23	216	239	216	239	0.96
3	14	3.8e-05	0.002	18.1	0.4	1	23	245	267	245	267	0.98
4	14	1.4e-07	7.7e-06	25.7	2.7	1	23	273	295	273	295	0.99
5	14	7.1e-06	0.00038	20.4	4.6	1	23	301	323	301	323	0.98
6	14	3.6e-07	1.9e-05	24.4	1.8	1	23	329	352	329	352	0.95
7	14	9.9e-07	5.3e-05	23.1	1.4	1	23	358	380	358	380	0.98
8	14	4.1e-05	0.0022	18.0	2.1	1	23	386	408	386	408	0.98
9	14	0.00015	0.008	16.2	1.6	1	23	414	436	414	436	0.99
10	14	7.5e-08	4e-06	26.6	0.7	1	23	442	464	442	464	0.98
11	14	6.5e-07	3.5e-05	23.6	1.3	1	23	470	492	470	492	0.98
12	14	0.05	2.7	8.3	2.9	1	23	498	517	498	517	0.95
13	14	1.1e-06	5.9e-05	22.9	0.9	1	23	523	545	523	545	0.98
14	14	9.8e-05	0.0052	16.8	4.6	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: atggAGAATCTCTGCCGATGTTGTCATTCTCACTACGGCTTCAAAAGCCTTAATACATCTTACTCATACGAAGGCACAGAAGAAACTTATTCGTCGATGTTGCAAAAGACTTTCGACATTATTATAAGCCCAGTAATAGGAGAATCAAATACTATCACTTACTCTATCTGTGACGTATGCATTTCTCATTTGCAAGATGCATTAATATTCAAGAAGCAAGTGATCAGTTGTGAACAGTTACTGTATACACATTACAATACCTTAAGTTACAAAGGCATAACATCTTGTATAAATACAGTAAAAGAAGAGGTTACAGAATTACAAAATGggtTAAAGCAAGAATCTCTTCATGACAATGACACAGAATCTAAATGtgaaaacaaaattacattagaATGTTTGAATAACTCTACTATAGATACAGCTGATGACCAGCCACTGTCTATATTGAAAAGCAAGGAATCAGTACAAGAATCAGAACCTGAGGCAGACTGGGCGAGTGGACAAGAACTCAGTGACGATGATATCTCAAAATCCAGAAGTCGGAACCAATCTAAGAAATATACATGCGATGTCTGTTGCaaacaatttacttattaCGGTTCATTAGAAGTTCATTTACTCACACATAGCGGTGAGAAAACTTATCAATGTcttatatgtaataataaatttacacagAATAAGGAtcttacaaaacatatatctAATGATCATTCAGATAATGGGACATATCCTTGTAATATGTGCACGAAAATATTTGACAAAGCTCGCCTTTTGAAAAGTCATTTAGCAACACACTATGATATTGACaagtttaaatgtaatgaCTGCGGTAAACAATTTCAACGGAAGAAAGGATTAAAAGAACATATGAAAACCCATACTAAAGAGAAAAATTTCACATGTGAAATATGTCATAAATCATTCGGACATAGTCAAACTCTAAAATCACATATCTTAACACATACAGGTGAAAAACCGTTTGTCTGTGACGTATGCGGACGAAGATTTTCACAACGGACACATTTGAAACggcatatatttattatacatacaggGATTAAGCCATATTCATGTAAAGATTGCAATAAGCAATTTTCAAGCAAGAGTTATTTAGCAATTCACGCACGTCAGCATACAGGAGAAAGACCGCATACTTGTGAAGTATGTAAAAAAGATTTCACAGCATATACAACTTTGAAAGTACATATGCGAGTACATACTGGCCGTAAACCGTATACATGTAGCTTCTGTGACAGACAGTTTGCTCAAATGGCCAGTTTTAAACTACACGAACGAACTCACACCGGTGAAAGACCATATTCGTGTAAAGTATGTAAGAAGCCATTTTCAGACAATGGGTATTTGAAGATTCATATGCGTGTACACACTGGTGAGAAACCGTACAATTGTGAAGTTTGTAAACGGTCCTTTAGAGAAACGGGACAATTGAAACGTCACATGAGAGTACATACAGGTATAAAACCGTACacttgtaaaatatgtaacaaacaaatagGTAACTTATCTAAACATATGCGTGTACATTCTGATGAAAGACCATTTAATTGCAGtatatgtaataaacaatttactatAAATGGTAATTTGAAACTACATATGAGAATTCATACGGGGGAGAGACCATTTACCTGTGATTTATGTAACAGTCAATTTACACAGAGCAGTGGTCTTAAACGGCATCGATGTACGCATGTTGATAAAGTTAATCCTTAA
Protein Sequence: MENLCRCCHSHYGFKSLNTSYSYEGTEETYSSMLQKTFDIIISPVIGESNTITYSICDVCISHLQDALIFKKQVISCEQLLYTHYNTLSYKGITSCINTVKEEVTELQNGLKQESLHDNDTESKCENKITLECLNNSTIDTADDQPLSILKSKESVQESEPEADWASGQELSDDDISKSRSRNQSKKYTCDVCCKQFTYYGSLEVHLLTHSGEKTYQCLICNNKFTQNKDLTKHISNDHSDNGTYPCNMCTKIFDKARLLKSHLATHYDIDKFKCNDCGKQFQRKKGLKEHMKTHTKEKNFTCEICHKSFGHSQTLKSHILTHTGEKPFVCDVCGRRFSQRTHLKRHIFIIHTGIKPYSCKDCNKQFSSKSYLAIHARQHTGERPHTCEVCKKDFTAYTTLKVHMRVHTGRKPYTCSFCDRQFAQMASFKLHERTHTGERPYSCKVCKKPFSDNGYLKIHMRVHTGEKPYNCEVCKRSFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPFNCSICNKQFTINGNLKLHMRIHTGERPFTCDLCNSQFTQSSGLKRHRCTHVDKVNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149758; iTF_01157025; iTF_01155683; iTF_01143269; iTF_01140353; iTF_01142541; iTF_00958107; iTF_01147531; iTF_01154411; iTF_01159884; iTF_01143990;
90% Identity: iTF_01149758; iTF_01140353; iTF_01143269; iTF_01143990; iTF_01147531;
80% Identity: -