Basic Information

Insect: Papilio glaucus
Gene Symbol: -
Assembly: None
Location: scaffold:51958-56473[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0067 0.41 11.0 4.1 1 23 190 212 190 212 0.98

2 14 4.6e-05 0.0028 17.8 0.7 1 23 218 241 218 241 0.97

3 14 1.2e-05 0.00076 19.6 1.2 1 23 247 269 247 269 0.98

4 14 1.4e-07 8.8e-06 25.7 2.7 1 23 274 296 274 296 0.99

5 14 1.4e-05 0.00083 19.5 5.2 1 23 302 324 302 324 0.98

6 14 3.6e-07 2.2e-05 24.4 1.8 1 23 330 353 330 353 0.95

7 14 9.8e-07 6e-05 23.1 1.4 1 23 359 381 359 381 0.98

8 14 4e-05 0.0025 18.0 2.1 1 23 387 409 387 409 0.98

9 14 0.00015 0.0091 16.2 1.6 1 23 415 437 415 437 0.99

10 14 7.5e-08 4.6e-06 26.6 0.7 1 23 443 465 443 465 0.98

11 14 4.1e-07 2.5e-05 24.3 1.3 1 23 471 493 471 493 0.98

12 14 0.05 3 8.3 2.9 1 23 499 518 499 518 0.95

13 14 1.5e-06 9.2e-05 22.5 1.0 1 23 524 546 524 546 0.97

14 14 0.00014 0.0084 16.3 3.5 1 23 552 574 552 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0067	0.41	11.0	4.1	1	23	190	212	190	212	0.98
2	14	4.6e-05	0.0028	17.8	0.7	1	23	218	241	218	241	0.97
3	14	1.2e-05	0.00076	19.6	1.2	1	23	247	269	247	269	0.98
4	14	1.4e-07	8.8e-06	25.7	2.7	1	23	274	296	274	296	0.99
5	14	1.4e-05	0.00083	19.5	5.2	1	23	302	324	302	324	0.98
6	14	3.6e-07	2.2e-05	24.4	1.8	1	23	330	353	330	353	0.95
7	14	9.8e-07	6e-05	23.1	1.4	1	23	359	381	359	381	0.98
8	14	4e-05	0.0025	18.0	2.1	1	23	387	409	387	409	0.98
9	14	0.00015	0.0091	16.2	1.6	1	23	415	437	415	437	0.99
10	14	7.5e-08	4.6e-06	26.6	0.7	1	23	443	465	443	465	0.98
11	14	4.1e-07	2.5e-05	24.3	1.3	1	23	471	493	471	493	0.98
12	14	0.05	3	8.3	2.9	1	23	499	518	499	518	0.95
13	14	1.5e-06	9.2e-05	22.5	1.0	1	23	524	546	524	546	0.97
14	14	0.00014	0.0084	16.3	3.5	1	23	552	574	552	574	0.97

Sequence Information

Coding Sequence: ATGGAGAACCTCTGTCGATGTTGTCATTCTCATTATGGCTTTAAAAGTCTTAATACCTCTTGTACATACGGAGGTACAGAAGAAACTTATTCGACGATGTTACAAAAGACTTTCGACATTGTTGTGAGCCCAGTAATTGGTGAGTCAAACACCATACCTTACTCCATCTGTGATGTGTGCATATCACATTTACACGATGCACTAATTTTCAAGAAGCAAGTGATAACCTGTGAACGGTTGCTGTATACACATTATGATAACCTTAGTTACAAAGGGATAACATCTTGTATTAATACAGTGAAAGAAGAGGAGACAGAATTACATAATGGTCTAAAGGAAGAATCCATTCAGGACAATGGCATTGATTCTAAATGTGACAAAAAAAAATCCTTAGAGTACTTAAATGACTCAACTATTGATACAGCTGATGACCAACCACTGTCCATTCTAAAGAGCATTAAGGAACCATTAGACCAAGAATCTGAAACTGAAGCTTACTGGGCGAGTGGGCCCGATCTCAGTGAAGATGAGGTCTCAAAACCCAGAAGTCGGACACAATCCAAGAAATATACATGCAATGTCTGTTGCAAACAATTCACTTATCATGGTTCATTGGAAGTCCATTTACTCTCACATAGCGGAGAGAAAAGTTATCAATGTCTTATATGTAACGACAAATTTACTCAGAATAAGGATCTAACAAAACATATATCAGTAGATCATTCTGATAATGGGACATATCCTTGTAACATGTGCACCAAAACATTTGATAAAGCTCGGCTTTTGAAAAGTCACTTGTCAACTCACTATATGGACAAGTTTAAATGTAATGACTGTGGTAAACAATTCCAACGGAAAAAAGGATTAAAAGAACATATGAAAACGCATACTAAAGAGAAAAACTTTACTTGTCAGATATGTCATAAATCATTTGGGCATAGTCAAACTCTAAAATCTCACATCTTAACGCATACCGGTGAGAAGCCATTTGTTTGTGACGTATGCGGGCGAAGATTTTCACAACGGACACATTTGAAAAGGCATATATTTATTATACATACAGGCATTAAACCATACTCGTGTAAAGATTGCAATAAGCAATTCTCAAGCAAAAGTTATTTAGCAATTCATGCCCGTCAGCATACTGGTGAAAGACCGCATACTTGTGAAGTATGTAAAAAAGATTTCACTGCATATACTACATTAAAAGTTCATATGCGAGTACACACTGGCCGCAAACCCTATACATGCAGTTTTTGTGACAGGCAGTTCGCTCAAATGGCCAGTTTTAAGCTCCACGAACGAACCCACACCGGTGAAAGACCTTATTCTTGTAAAGTGTGTAAGAAACCATTTTCAGATAATGGTTACTTAAAGATTCATATGCGTGTACATACTGGTGAAAAACCATACAGTTGTGAGGTTTGTAAGAGGTCCTTTAGAGAGACCGGGCAACTGAAACGTCACATGAGAGTCCACACCGGCATAAAACCGTATACTTGTAAAATTTGCAATAAGCAAATAGGTAACTTGTCGAAACACATGCGCGTACATTCTGATGAGAGGCCGTTTAATTGCAATATATGTAATAAACAATTTTCTATAAATGGCAATTTGAAACTTCACATGAGACTTCACACGGGTGAGAGGCCGTTCGCTTGTGATCTATGTAACAGTCAATTTACTCAAAGCAGTGGTCTCAAAAGGCATAGATGTACACACATAGACAAAGTTAATTCATAA
Protein Sequence: MENLCRCCHSHYGFKSLNTSCTYGGTEETYSTMLQKTFDIVVSPVIGESNTIPYSICDVCISHLHDALIFKKQVITCERLLYTHYDNLSYKGITSCINTVKEEETELHNGLKEESIQDNGIDSKCDKKKSLEYLNDSTIDTADDQPLSILKSIKEPLDQESETEAYWASGPDLSEDEVSKPRSRTQSKKYTCNVCCKQFTYHGSLEVHLLSHSGEKSYQCLICNDKFTQNKDLTKHISVDHSDNGTYPCNMCTKTFDKARLLKSHLSTHYMDKFKCNDCGKQFQRKKGLKEHMKTHTKEKNFTCQICHKSFGHSQTLKSHILTHTGEKPFVCDVCGRRFSQRTHLKRHIFIIHTGIKPYSCKDCNKQFSSKSYLAIHARQHTGERPHTCEVCKKDFTAYTTLKVHMRVHTGRKPYTCSFCDRQFAQMASFKLHERTHTGERPYSCKVCKKPFSDNGYLKIHMRVHTGEKPYSCEVCKRSFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPFNCNICNKQFSINGNLKLHMRLHTGERPFACDLCNSQFTQSSGLKRHRCTHIDKVNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144703;
90% Identity: iTF_01144703;
80% Identity: -