Basic Information

Insect: Papilio gigon
Gene Symbol: -
Assembly: GCA_027563995.1
Location: JAODUI010000009.1:3858458-3861110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0021 0.15 12.7 2.3 1 23 195 217 195 217 0.98

2 14 1.1e-05 0.00081 19.9 1.2 1 23 223 246 223 246 0.97

3 14 4.3e-06 0.00031 21.2 0.7 1 23 252 274 252 274 0.98

4 14 1.6e-07 1.1e-05 25.7 2.7 1 23 280 302 280 302 0.99

5 14 1.1e-05 0.00079 19.9 3.2 1 23 308 330 308 330 0.99

6 14 4e-07 2.9e-05 24.4 1.8 1 23 336 359 336 359 0.95

7 14 1.1e-06 7.8e-05 23.1 1.4 1 23 365 387 365 387 0.98

8 14 3.4e-05 0.0024 18.4 2.6 1 23 393 415 393 415 0.98

9 14 0.00023 0.016 15.7 1.5 1 23 421 443 421 443 0.99

10 14 8.3e-08 5.9e-06 26.6 0.7 1 23 449 471 449 471 0.98

11 14 7.7e-07 5.5e-05 23.5 1.3 1 23 477 499 477 499 0.98

12 14 0.054 3.9 8.3 2.9 1 23 505 524 505 524 0.95

13 14 1.6e-06 0.00011 22.5 0.8 1 23 530 552 530 552 0.98

14 14 0.00015 0.011 16.3 3.5 1 23 558 580 558 580 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0021	0.15	12.7	2.3	1	23	195	217	195	217	0.98
2	14	1.1e-05	0.00081	19.9	1.2	1	23	223	246	223	246	0.97
3	14	4.3e-06	0.00031	21.2	0.7	1	23	252	274	252	274	0.98
4	14	1.6e-07	1.1e-05	25.7	2.7	1	23	280	302	280	302	0.99
5	14	1.1e-05	0.00079	19.9	3.2	1	23	308	330	308	330	0.99
6	14	4e-07	2.9e-05	24.4	1.8	1	23	336	359	336	359	0.95
7	14	1.1e-06	7.8e-05	23.1	1.4	1	23	365	387	365	387	0.98
8	14	3.4e-05	0.0024	18.4	2.6	1	23	393	415	393	415	0.98
9	14	0.00023	0.016	15.7	1.5	1	23	421	443	421	443	0.99
10	14	8.3e-08	5.9e-06	26.6	0.7	1	23	449	471	449	471	0.98
11	14	7.7e-07	5.5e-05	23.5	1.3	1	23	477	499	477	499	0.98
12	14	0.054	3.9	8.3	2.9	1	23	505	524	505	524	0.95
13	14	1.6e-06	0.00011	22.5	0.8	1	23	530	552	530	552	0.98
14	14	0.00015	0.011	16.3	3.5	1	23	558	580	558	580	0.97

Sequence Information

Coding Sequence: ATGGAGAATCTCTGTCGATGTTGTCATTCCCATTACGGTTTTAAAAATCTCGATACCTCTTATTCAAACGAAGGCACAGAAGACTCTTATTCGACGATGTTGCAAAAGACTTTCGACATTATTGTGAGTCCAGTTATTGGTGAACTGAATACTATATCTAATTCCATCTGTGATGTATGTATTTCTCACTTACAAGATGCACTGACTTTTAAGATGCAAGTGATCAATTGTGAGCAGTTACTGTATACACAATATACCACTTTAAGTTACAAAGGAATATCATCTTGTATCAATACTGTCAAAGAAGAGGTGACAGATAATAATGGATTAAAGCAAGAATCTCTTCATGAAAACACTGAAATGAAACTGAACACTGAATGTGATAATAAAATGACACTACAATGTCTGAATGACTCTATAGATACTGCCGATGACCAGCCATTATCTAGACTTAAGGAAGGCAAACAAGGAAGCAAAGAAGCATTGCTCCAAGAGTCGGAACCTGATGCAGACTGGGCCAGTGGACTTGAACATAGTGATGATGAGATCTCGAAACCTATAATTCGGAATCAACCAAAGAAATATTCATGCAACGTCTGTTGCAAACAATTCACTTATTATGGTTCATTAGAAGTTCATCTACTCACAcacagcggtgagataacttaccaatgtctcatatgtaataataaatttactcagaacaaggatcttactaaacatatatcagttaaccattccgataatggaacatatccttgtaatatgtgcaataaatcatttgacaaagctcgtctattgagaagtcatttagaaactcattataatatagaaaagttcaaatgcaacgactgcggtaaacaatttcaaaggaagaaaggattgaaggaacatatgaaaactcatacgaaagagaaaaattatacatgtgagacatgtcagaaatccttcggacatagtcaaacactaaagtctcatatattaacgcatacgggggagaaaccgtttgtatgtgacgtgtgcggtcgaagattttcacaacgcacacatttgaaacgtcatatatttataatacatacaggtgttaagccttactcgtgtaaagattgcaataaacaattttcaagcaagagttatttagctatacatgctcgtcagcacaccggtgaacgaccgcacacatgtgaagtgtgtaaaaaaaatttcacagcttatacaacattgaaagtacatatgcgtgtacataccggtcgtaaaccgtatacatgcagtttctgtgacagacaattcgcacaaatggccagttataaattacacgaacgaactcacaccggtgagagaccatattcttgtaaagtgtgtaaaaaaccattctcagataatggttacttaaagatacacatgcgtgtacacactggtgagaaaccctataattgtgaagtgtgtaaacggtctttcagagagaccggtcaattgaaacgtcatatgcgaatacataccggtataaaaccttatacttgtaaaatttgcaacaaacagataggtaatttatcaaaacatatgcgggtgcattctgatcaaagaccgtataactgcagtgtatgtaataaacagtttactataaatggtaatttgaaacttcatatgagaatccatacgggggagagaccgtttgcttgtgatttatgtaatagccaatttactcaaagcagtggtcttaaacgccatagatgtacacatacggagaaaGTTAATCAACAATaa
Protein Sequence: MENLCRCCHSHYGFKNLDTSYSNEGTEDSYSTMLQKTFDIIVSPVIGELNTISNSICDVCISHLQDALTFKMQVINCEQLLYTQYTTLSYKGISSCINTVKEEVTDNNGLKQESLHENTEMKLNTECDNKMTLQCLNDSIDTADDQPLSRLKEGKQGSKEALLQESEPDADWASGLEHSDDEISKPIIRNQPKKYSCNVCCKQFTYYGSLEVHLLTHSGEITYQCLICNNKFTQNKDLTKHISVNHSDNGTYPCNMCNKSFDKARLLRSHLETHYNIEKFKCNDCGKQFQRKKGLKEHMKTHTKEKNYTCETCQKSFGHSQTLKSHILTHTGEKPFVCDVCGRRFSQRTHLKRHIFIIHTGVKPYSCKDCNKQFSSKSYLAIHARQHTGERPHTCEVCKKNFTAYTTLKVHMRVHTGRKPYTCSFCDRQFAQMASYKLHERTHTGERPYSCKVCKKPFSDNGYLKIHMRVHTGEKPYNCEVCKRSFRETGQLKRHMRIHTGIKPYTCKICNKQIGNLSKHMRVHSDQRPYNCSVCNKQFTINGNLKLHMRIHTGERPFACDLCNSQFTQSSGLKRHRCTHTEKVNQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144703;
90% Identity: -
80% Identity: -