Basic Information

Insect: Parnassius mnemosyne
Gene Symbol: -
Assembly: GCA_963668995.1
Location: CAVLGL010000088.1:8433193-8437125[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0018 0.39 13.2 2.5 1 23 197 219 197 219 0.99

2 14 0.0014 0.28 13.6 1.4 1 23 225 248 225 248 0.98

3 14 8.8e-05 0.018 17.4 0.3 1 23 254 276 254 276 0.98

4 14 4.3e-06 0.0009 21.5 5.8 1 23 282 304 282 304 0.99

5 14 2e-05 0.0043 19.4 5.3 1 23 310 332 310 332 0.98

6 14 6.7e-07 0.00014 24.0 1.1 1 23 338 361 338 361 0.95

7 14 1.6e-06 0.00034 22.8 2.2 1 23 367 389 367 389 0.98

8 14 5.6e-05 0.012 18.0 2.1 1 23 395 417 395 417 0.98

9 14 0.00021 0.043 16.2 1.6 1 23 423 445 423 445 0.99

10 14 1e-07 2.2e-05 26.6 0.7 1 23 451 473 451 473 0.98

11 14 3.2e-07 6.7e-05 25.0 1.3 1 23 479 501 479 501 0.98

12 14 0.067 14 8.3 2.9 1 23 507 526 507 526 0.95

13 14 1.8e-06 0.00037 22.7 0.7 1 23 532 554 532 554 0.98

14 14 4.4e-05 0.0092 18.3 3.9 1 23 560 582 560 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0018	0.39	13.2	2.5	1	23	197	219	197	219	0.99
2	14	0.0014	0.28	13.6	1.4	1	23	225	248	225	248	0.98
3	14	8.8e-05	0.018	17.4	0.3	1	23	254	276	254	276	0.98
4	14	4.3e-06	0.0009	21.5	5.8	1	23	282	304	282	304	0.99
5	14	2e-05	0.0043	19.4	5.3	1	23	310	332	310	332	0.98
6	14	6.7e-07	0.00014	24.0	1.1	1	23	338	361	338	361	0.95
7	14	1.6e-06	0.00034	22.8	2.2	1	23	367	389	367	389	0.98
8	14	5.6e-05	0.012	18.0	2.1	1	23	395	417	395	417	0.98
9	14	0.00021	0.043	16.2	1.6	1	23	423	445	423	445	0.99
10	14	1e-07	2.2e-05	26.6	0.7	1	23	451	473	451	473	0.98
11	14	3.2e-07	6.7e-05	25.0	1.3	1	23	479	501	479	501	0.98
12	14	0.067	14	8.3	2.9	1	23	507	526	507	526	0.95
13	14	1.8e-06	0.00037	22.7	0.7	1	23	532	554	532	554	0.98
14	14	4.4e-05	0.0092	18.3	3.9	1	23	560	582	560	582	0.98

Sequence Information

Coding Sequence: ATGATGTCCGTTTGGTTTAACATGGAAAATCTCTGTCGTTGCTGTCATTCTCAATACGGCTTTAAAAGTCTCAATGCTTCTCATGAAGGTATCGAAGAAACTTACTCTGTTATGTTGCAAAGGACTTTTGATATTGTTGTGAATCCATCAATTGGGGAGCAAAATACAGTTTCTTATTCTATCTGTGATGTATGCATATCACATTTGCGTGATGCTCTATTTTTCAAGCAACAAGTGGAAACTTGTGAACAGATCCTATCTTCACATTACAATAGTCCGGAAGTCAAAGgtAATTTTAAAAATGCAGTCAAAGAAGAGGCGACAGAATCACATGatgGGTTAAAGGAGGAATGCTGTCAAGAGAATGAAGACGACACTGAAAAAAAATGTACTGATAATAAGCTGGAAGTCTTCGAAAACTCAATTGAAGATACTTTTGATGATCAACCTTTGTCAGTTCTTAAGAGCAAGGTTCATAAAGAAGAAACGATAGACCAAGAATCAGAACCAGATGCAGACTGGGCTGCTGCAGCTACTGTTAGCGATGATGAGATAACCAAGTCCAATAGTCAgagaagagtaaaaaaatacacctGCAATGTTTGCTGTAAACAATTTACATATTATGGCTCCTTGGAAGTCCATTTATTGACACATAATGGAGAGAAAAATTATCAATGtcttatatgtaataataaatttttgcAGAATAAGGATCTAACAAAGCATATATCTACAAGTCATTCTGAAGGTGGTGTATATCCATGTAATATGTGTGCCAAATCATTTGACAAAGCTCGCCTTTTGAAGAACCATTTAGCAAGTCACTACGATATGGACAAATTTAAGTGCAGCCATTGTGACAAACAGTTCCAACGCAAAAAAGGTTTGAAAGAACATATGAAGACACACACGAAGGAGAAAAATTTCACTTGTCAGATATGCCACAAATCTTTTGGTCACAATCAAACTTTAAAATCTCATATACTTACCCACACTGGGGAGAAACCATATGTTTGTGACGTGTGTGGCCGTCGATTTGCCCAACGCACACATTTAAAGAGGCATATCTTCATTATCCACACTGGGGTTAAACCTTACTCATGTAAAGAATGCAACAAGCAGTTTTCCAGCAAAAGTTACTTGGCAATTCACACCCGGCAGCATACTGGTGAACGTCCACATACATGTGAAGTGTGTAAAAAAGATTTTACTGCTTATACAACTTTAAAAGTACACATGCGGGTCCACACTGGTCGCAAGCCCTACACTTGCAGCTTTTGTGACAGACAGTTTGCTCAAATGGCCAGTTTTAAACTACATGAGCGCACCCATACTGGTGAACGACCATACTCttgcaaagtttgtaaaaaaCCATTTTCAGATAATGGTTACTTAAAGATTCACATGAGAGTTCATACTGGAGAAAAGCCATACAGCTGTGAAATTTGTAAGAGGTCATTTAGAGAGACTGGTCAATTAAAACGTCATATGAGAGTGCACACTGGAATAAAACCATACACATGCAAGATATGTAATAAGCAAATTGGTAATTTATCAAAGCACATGCGTGTACATTCTGACGAGAAACCTTACAACTGCAGTGTATGTAATAAACAATTTTCCATAAGCGGTAATTTAAAACTGCATATGAGGATTCATACTGGTGAAAGACCTTTCTCTTGTGATATCTGTAATAGTCAATTTAGTCAAAGCAGTGGACTGAAAAGGCATAGATGTACACACTTGGACAGAGTTAACTCTTAG
Protein Sequence: MMSVWFNMENLCRCCHSQYGFKSLNASHEGIEETYSVMLQRTFDIVVNPSIGEQNTVSYSICDVCISHLRDALFFKQQVETCEQILSSHYNSPEVKGNFKNAVKEEATESHDGLKEECCQENEDDTEKKCTDNKLEVFENSIEDTFDDQPLSVLKSKVHKEETIDQESEPDADWAAAATVSDDEITKSNSQRRVKKYTCNVCCKQFTYYGSLEVHLLTHNGEKNYQCLICNNKFLQNKDLTKHISTSHSEGGVYPCNMCAKSFDKARLLKNHLASHYDMDKFKCSHCDKQFQRKKGLKEHMKTHTKEKNFTCQICHKSFGHNQTLKSHILTHTGEKPYVCDVCGRRFAQRTHLKRHIFIIHTGVKPYSCKECNKQFSSKSYLAIHTRQHTGERPHTCEVCKKDFTAYTTLKVHMRVHTGRKPYTCSFCDRQFAQMASFKLHERTHTGERPYSCKVCKKPFSDNGYLKIHMRVHTGEKPYSCEICKRSFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDEKPYNCSVCNKQFSISGNLKLHMRIHTGERPFSCDICNSQFSQSSGLKRHRCTHLDRVNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144703;
90% Identity: iTF_01155683;
80% Identity: -