Pgig016485.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- Mbd3
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000013.1:2407851-2410164[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-28 6.6e-25 86.7 0.1 1 72 8 74 8 78 0.95 2 2 0.0016 3.4 7.5 0.1 29 74 96 149 81 152 0.86
Sequence Information
- Coding Sequence
- ATGCAGAATATGAATATTTCAATAGAAAGAAAAAGAACTGACTGTTCAGCCTTGCCAAAAGGATGGCAAAGAGAAGAGGTTCTAAGAAAAACAGGACTTTCTGCTGGCAAAGTTGACGTTTTTTATTACAGCCCAACAGGTAAAAAGTTTCGCAGTAAACCAGAGCTAGTTCGATATCTGGGTGATAGTATGGACCTGTCATGTTTCGACTTTCAGCAGGGCCAAATAAACACAATGCTCCTGTGCAAGACCAAGAAAGCTCGAGCGCAGTTTGACTACAGAGGTGTTCGCTCAGATTCATCTCTGGTGCCACCCATTCGTCAGACTGCATCAATTTTTAAGCAGCCCGTAACTGTTTATAAAACTCAGGAGAGTAAAGTTAAAACAGATCTGAAACAAGGCACACAGGAGAAGCCTAAACAATTGTTTTGGGAGAAACGTTTGGAGAATTTGACCGCATGTGATGCAAATGGTGTAATAGGAACTACAACATTGCCGAAGTACATAAAGCCTCTGGGGCCGTTTACAACTGATGCAACAACTATCCAATCTCTGGCCACAGCTCTTCATGTTTCATCACAGCCCATCACAGGTCAAGTAGGTTCAAAGCAAACGATAATGGAAAATCCTGGAGTTTTTTTAAACCCTGAGCAGCCACTGATTGCCGCTGTAACTATAACTAAAGACGACGTGAGACGTCAGGAGGAGCGCGTCAACCGCGCCCGACAACGGCTGCGGGCTGCGCTCGTGGCGGCATAG
- Protein Sequence
- MQNMNISIERKRTDCSALPKGWQREEVLRKTGLSAGKVDVFYYSPTGKKFRSKPELVRYLGDSMDLSCFDFQQGQINTMLLCKTKKARAQFDYRGVRSDSSLVPPIRQTASIFKQPVTVYKTQESKVKTDLKQGTQEKPKQLFWEKRLENLTACDANGVIGTTTLPKYIKPLGPFTTDATTIQSLATALHVSSQPITGQVGSKQTIMENPGVFLNPEQPLIAAVTITKDDVRRQEERVNRARQRLRAALVAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00008033; iTF_01147396; iTF_01149615; iTF_01146257; iTF_00723978; iTF_00835610; iTF_00467423; iTF_00468192; iTF_01143114; iTF_00957967; iTF_01402736; iTF_01425085; iTF_01569366; iTF_00855902; iTF_01145279; iTF_01401312;
- 80% Identity
- -