Lcur012543.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- Mbd3
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000037.1:3654415-3657283[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-27 3e-23 82.5 0.1 1 72 7 73 7 77 0.95 2 2 0.00045 1.8 9.5 0.1 29 74 95 148 80 151 0.87
Sequence Information
- Coding Sequence
- ATGAATATGAATATTTCCATTGAACGAAAAAGAGCTGATTGTTCTTCTTTACCGAAGGGTTGGCAAAGAGAAGAAGTAACTAGAAAAACTGGGCTTTCTGCGGGCAAAGTCGATGTTTTCTATTACAGCCCAACAGGTAAAAAGTTTTGCAGTAAACCTGAGCTAGTTCGATATCTGGGTGACAGTATGGACCTATCGTGTTTCGACTTTCAACAGGGTCAAATAAACACGATGCTCCTCTGCAAGGCAAAGAAAGCTCGGGCCCAGTTTGATTACAGAGGAGTCCGGTCCGATGCATCACTGGTGCCTCCCATTCGCCAAACTGCTTCAATTTTCAAACAACCAGTAACAGTTTATAAAACTCAAGAGAGTAAAGTAAAGACAGATCTTAAACAAGGAACACAAGAGAAGCCAAAGCAATTGTTTTGGGAGAAAAGATTGGAGaatCTAACTGCTTGCGATGCAAATGGAGTAATTGGTACTACTTCATTAccgaaatatattaaatctttagGGCCGTTTACATCTGATGCGACAACTATACAATCACTGGCTACTGCGCTACATGTATCTTCACAGCCAATCACAGgtCAAACCGGTTCAAAGCAGACAATAATGGAGAACCCCGGAGTTTTTCTTAATCCCGAACAACCGCTTATTGCTTCAGTTACGATAACCAAAGATGATGTAAGACGGCAAGAAGACAGAGTAAAGCGCGCACGACAGAGACTGCGCGAGGCTCTGGTGGCCGCATAG
- Protein Sequence
- MNMNISIERKRADCSSLPKGWQREEVTRKTGLSAGKVDVFYYSPTGKKFCSKPELVRYLGDSMDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRSDASLVPPIRQTASIFKQPVTVYKTQESKVKTDLKQGTQEKPKQLFWEKRLENLTACDANGVIGTTSLPKYIKSLGPFTSDATTIQSLATALHVSSQPITGQTGSKQTIMENPGVFLNPEQPLIASVTITKDDVRRQEDRVKRARQRLREALVAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_01142408;
- 80% Identity
- -