Pdem019535.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- rst2
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000026.1:1127041-1135177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0063 0.61 11.2 0.2 3 23 101 121 99 121 0.97 2 15 0.0018 0.18 12.9 2.9 1 23 212 234 212 234 0.98 3 15 6.6e-05 0.0063 17.4 1.2 1 23 240 263 240 263 0.96 4 15 0.026 2.5 9.3 6.3 1 23 268 291 268 291 0.93 5 15 7.8e-06 0.00076 20.3 1.7 2 23 425 446 424 446 0.98 6 15 0.00014 0.013 16.4 2.4 1 23 452 474 452 474 0.98 7 15 0.17 16 6.7 7.6 1 23 521 543 521 543 0.96 8 15 6.4 6.2e+02 1.7 0.5 2 23 551 572 550 572 0.92 9 15 0.013 1.2 10.3 4.8 1 23 578 600 578 600 0.95 10 15 2.8e-06 0.00028 21.7 0.6 1 23 606 628 606 628 0.99 11 15 0.0016 0.15 13.1 2.7 1 23 637 659 637 659 0.98 12 15 0.00044 0.042 14.8 2.4 2 23 702 723 701 723 0.98 13 15 0.054 5.2 8.3 6.2 1 23 740 762 740 762 0.95 14 15 1.3e-06 0.00013 22.8 0.6 1 23 768 790 768 790 0.98 15 15 3.8e-07 3.7e-05 24.5 3.1 1 23 796 819 796 819 0.98
Sequence Information
- Coding Sequence
- ATGAGTAACAATCATAATATAGAAATGGATCCTTTAGCAACATATGATTTTACACAATATCCAAACTACCCACACTACTCTGCCATACCATACCAAAATACAAACCATAACAACGaagtcaaaaatatacaatatccAACAGATAAGAATCCCacaaatttagaaataacagataaaaacgaaaactgtaatataaaagaaaatatcgaccaaagtaatacaaaaaaagatataaaaggtaaagaaaaaaagaattttctaTCGGAGAAAATAAACGACAGTAATTTCCCTTTTTACGGTTGCGCTGTATGTAATATcagttttaaattactcaCCGAACTAGATAAACATATAACAACGCATAAAGACAGAATAACAAGCTACGGTttgagattaaaaaatcaattgaaaagaaaaaagatgcGTAAAGAACAGAAGAaaatgaagaaattaaaaaaatcgattaagAAAGAGAAAAATCCCGATATCGAAATAAAACCTGAAGACGGATATATCGGGGAGACTAAAACTGTAGATTATAAAGTTGAAGATAATAATATGGAAAGTAAATTAACTGaaggtaaagaaaataacaaagttgatTCAGAAAAAGATAACAATTTGGAGAAAATGTTCAAATGTTTTGCGTGTCAGAAACAATTCACTTTGAGTTATTATTTGAAGCTACATGTAAGGTCACATACAGATGAAAAACCTTACACATGTGCGGAGTGCGgacaatgttttataacagCAAGCAAGCTCGGGAGACATAACAAGAGAATACATCTGGCTATCAGACATCAGTGTAGgatatgttataaatacttttctaGGTTTGAATATTTAACGAAACATTTCGACAAAAAACATCCGGAGGATAAATTAGAAGGGGAACCTTATGATTATAATGCAATATTACCATATTTAAAGGAACTGGAGGAACAATTACAGATAAAACCAACAGAAAAGGAACCagaaaaaactgaaaaattatGGGAAGATTGGCCAATAGAAAACACAGAAACGAACAAACCCATAGAAAATGATATAGTTAACGGTATAACAACAGTGGTTGTTGAAATGGGTAATGGGTTTACGGAtacggaaataaaaaaagaaattgactCTGACGGATATGTTTCTGATATGAATAAAGATATGCAAGATAGCTGTTCGGATAGCGATTATTTCCCGTCAAATACATGGGCCGCGTCACCAAAAATAGAATCACCGCCGCATAAAAAACGACAAAAAATCGATGCACCCATAAAATGCGAGATATGCGAGAAAACGATACGGTCTCACTCATACTTACAAATACATATGAGGACTCATACTGGTGAAAAaccatttaaatgttatatttgtaatcgTGGGTTTATTACCGCAAGCAAAATGCATCGACACGTGCTAACACATTCGGAAAGTTTAGATGATCCAGCaatgaaattagaaataaataacgatTTAGAATCCGATAGTTTGAAacagaagaagaaaaaatgtaaagaCGgtacaaagaaaaaatcaaatcagagaattaaaaaacatcgtCCCCACGCTTGCGAATATTGTCACAAAAGGTTTTTACATCTAACAACACTACAAGTGCATAAAAAATCACACGACGGTGAAGAATTGGTACTGAAATGTCACTTTTGCTTGATGAAAATGGACGATGAAGAGGCCTTGAAGGTCCATGAGGGAACTCATGAAGGCCCGAAGCCttatttatgtactttatgcggaaaaacttataaaaaacgaGAAACTATGATGTATCACAGAAAACATCACACTTTAGAGAAAGAATACACATGTGATATTTGTTCAAAAAATTTCCCCTCGTCTCGTAAATTGGAGAAGCACATAGCGACTCATAGAACTGACCAGTTCGTGGTCAGATATGAGTGTCCTGTCTGCGCACATATGTTTAACACGAAATATCACATCAAAATGCATCTAGTTACCCACCAAAAGGAAGGATTGATAGTAGAAGCAAATAGGAACGAAATATTAGCAATGGTGTTACAAAACGCACGTAGGATACCAAAATATCCCGAATCCGGTACAAAAACATCACCAGAcgaacagaataaaaaatgtaacatatgcGGACAAGTTTTtcagcattttttttatttggaagAACATTTGAAGAGTCACGGTTCGAAGATAGCTTTGGAGGATGATGAAAAAatcgaagaaaaaaaacatatctgtCAAGTTTGCagcaaaagttttaaattgcattattatttgaaattacacAGTTTTACACATACTAAAGAGAAACCATATATATGTCAGCAATGTGGGAAAGGTTTTATAACGAGGgggaaattaaaaagacatttagAAACACACagcggattaaaaaaatatcaatgtcacatttgttataaattctttacCAGACCTAGTTATTTGAGAATACATGTTAGGACCATCCATGGCGCTGAAAATTTCGCGCTCGATAAACAGTTTGGGGTAAACATAGGCATGGGACAGACGGTATGA
- Protein Sequence
- MSNNHNIEMDPLATYDFTQYPNYPHYSAIPYQNTNHNNEVKNIQYPTDKNPTNLEITDKNENCNIKENIDQSNTKKDIKGKEKKNFLSEKINDSNFPFYGCAVCNISFKLLTELDKHITTHKDRITSYGLRLKNQLKRKKMRKEQKKMKKLKKSIKKEKNPDIEIKPEDGYIGETKTVDYKVEDNNMESKLTEGKENNKVDSEKDNNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTKHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQIKPTEKEPEKTEKLWEDWPIENTETNKPIENDIVNGITTVVVEMGNGFTDTEIKKEIDSDGYVSDMNKDMQDSCSDSDYFPSNTWAASPKIESPPHKKRQKIDAPIKCEICEKTIRSHSYLQIHMRTHTGEKPFKCYICNRGFITASKMHRHVLTHSESLDDPAMKLEINNDLESDSLKQKKKKCKDGTKKKSNQRIKKHRPHACEYCHKRFLHLTTLQVHKKSHDGEELVLKCHFCLMKMDDEEALKVHEGTHEGPKPYLCTLCGKTYKKRETMMYHRKHHTLEKEYTCDICSKNFPSSRKLEKHIATHRTDQFVVRYECPVCAHMFNTKYHIKMHLVTHQKEGLIVEANRNEILAMVLQNARRIPKYPESGTKTSPDEQNKKCNICGQVFQHFFYLEEHLKSHGSKIALEDDEKIEEKKHICQVCSKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGAENFALDKQFGVNIGMGQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01145416; iTF_01147540; iTF_01149768; iTF_01140363;
- 90% Identity
- -
- 80% Identity
- -