Pmem002562.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- rst2
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000021.1:690107-697613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0016 0.14 13.0 0.2 3 23 103 123 101 123 0.97 2 15 0.0018 0.16 12.9 2.9 1 23 218 240 218 240 0.98 3 15 2.5e-05 0.0021 18.7 1.5 1 23 246 269 246 269 0.97 4 15 0.025 2.2 9.2 6.3 1 23 274 297 274 297 0.93 5 15 1e-06 8.7e-05 23.1 0.4 2 23 435 456 434 456 0.98 6 15 6.8e-05 0.0059 17.3 1.9 1 23 462 484 462 484 0.98 7 15 0.072 6.2 7.8 6.4 1 23 529 551 529 551 0.96 8 15 0.61 53 4.9 0.4 2 23 559 580 558 580 0.95 9 15 0.012 1.1 10.2 4.8 1 23 586 608 586 608 0.95 10 15 7.4e-07 6.4e-05 23.5 0.6 1 23 614 636 614 636 0.99 11 15 0.0015 0.13 13.1 2.7 1 23 645 667 645 667 0.98 12 15 0.00042 0.037 14.8 2.4 2 23 709 730 708 730 0.98 13 15 0.053 4.5 8.3 6.2 1 23 747 769 747 769 0.95 14 15 1.3e-06 0.00011 22.7 0.6 1 23 775 797 775 797 0.98 15 15 1.2e-07 1e-05 26.1 3.1 1 23 803 826 803 826 0.98
Sequence Information
- Coding Sequence
- ATGAACTCAGACCTACACAGTGTCGAGGTCGATCCCCTAGCATATGATTATCCTCAATTTTCAAACTACCCACAAACATACCCTACTGTACAACAGAATACATATAATTACGATGTTAAATATCCAATAAATTATAACAACGAACATACAGACAGGAAAGAAATTATAGATATAAAAGAAAACTCCAATGTTAAAGAAAATGTCGATCAAAACAAACAGACAAAAGTTAAGAAAGAAACAAAAGGTAAAGATAGAAAGAGTTTTCTATCGGAGAAAATAGCTGACAGCGATTTCCCTTTTTACGGTTGTGCGGTATGCAATATTAGTTTTAAATTACTATCCGAACTAGATAAACACATCACAACGCATAAAGATAGAATAACAAGCTATGGTTTGAGATTGAAGAATCAATTGAAAAGAAAGAAAATCCGTAAGGAACAGAAGAAATTGAAAAAATTAAAAAAATCTTTAAAAAAATCGCAAAACGGAAGTGAAATCGAAATTAAACCTGAAGATGGTTATATAGGGAACACGAAAACTGTAGATTATAAACCGAATGAACTTGAAAATAATGTAGAATCTAAGTTAACGGAGGTCAAAGAAACCTCTACTAAGGAAGAACCTCAAAAGGACAATAACTTGGAAAAAATGTTCAAATGCTTTGCATGTCAAAAGCAATTTACATTAAGTTACTACCTTAAGTTACATGTTCGTTCACATACGGATGAAAAACCCTACACATGTGAGGAGTGCGGTCAATGCTTTATAACGGCCAGCAAGCTCGGGAGACACAATAAGAGAATACATCTAGCTATCCGACATCAATGTAGAATATGTTATAAATACTTCTCTAGGTTTGAATATTTAACAAAACACTTTGATAAGAAACATCCAGAAGATAAATTAGAAGGGGAACCTTATGATTATAACGCAATATTACCTTATTTGAAAGAACTTGAAGAACAATTACAGATAAAAACGGACGAACCACAAGAGAAGAGTGAAAAATTATGGGAAGATTGGCCGATAGATGATTCTAAATATACTAATATAAAAGAAATTGTCAAACCCATAGATAATGATGTAAATAGTATAACGACAGTAGTCGTGGAAATGCCTAAAGGATTTATGGATACGGAAATTAAAAAGGAGGTAGACTCGGATGGGTATACTTCGGATATTAAAGAcgatatacaagacagTTGTTCAGATAGCGATTATTTCCCATCAAATACGTGGGCAGCGTCACCTAAAATAGATTCACCTCCGCATAAAAAACGAGAAAAATTAGACACGCCTATAAAATGTGAAATATGTGAGAAAACAATAAGCTCCCAATCTTATTTACAAATACACATGAGAACGCATACAGGGGAAAAACCATTTAAATGTTATATATGTGATCGTGGGTTTATAACAGCTAGTAAAATGCATCGACATGTTTTAACGCACTCTGAGAGTTTAGACGATCCAGCTATGAAATTGGAAATAAATTCAGATTTAGGAACTGATGTGAAGAAAAATAAAAAAATTAAAGACGGTATAAAGAAAAAATCCAATCAAAGGTTGAAAAAAAATCGACCCCACGCTTGTGAGTATTGCCACAAAAGGTTCTTACATCTGGCAACACTACAAGTGCACAAGAAATCTCATGATGGTGAGGAACTGGTGCTGAAATGCCACTACTGCCTGATGAAGATGGATGATGAAGAGGCTCTGAAGGTCCACGAGGCGACGCACGAAGGTCCAAAGGCTTATTTATGCACGTTATGCGGAAAAACTTATAAGAAACGCGAAACTATGATGTACCATAGAAAACATCATACGACAGATAAAGAGTACACTTGCGATATTTGTTCTAAAAGTTTCCCTTCATCTCGTAAACTGGAGAAGCACATAGCAACTCACAGAGCGGACCAGTACGTGGTCAGATACGAGTGTCCTGTCTGTGCTCACATGTTTAATACTAAATATCACATAAAAATGCATTTAGTTACACATCAAAAGGAAGGATTAATAGTTGAAGCTAATAGAAACGAAATACTAGCTATGGTTTTACAAAATGCACGTCGGATACCGAAATATCCGGAATCCGGTGTAAAATCAACAGATGAACAAAATAAAAAATGCAATATTTGTGGTCAGGTTTTTCAGCATTTTTTCTACTTAGAAGAACATTTGAAGAGCCACGGATCGAAAATAGCTTTGGAAGATGATGAAAAAATCGAAGAGAAAAAACATATATGTCAAGTTTGCAGTAAGAGTTTTAAGTTGCATTATTATTTAAAACTGCACAGTTTTACACATACTAAAGAGAAACCATACATTTGTCAGCAATGTGGGAAAGGTTTTATAACTCGGGGTAAATTGAAAAGGCATCTAGAAACACACAGCGGTTTAAAAAAATACCAATGTCATATTTGTTATAAATTTTTTACACGACCTAGTTATTTAAGAATTCATATAAGGACTATACATGGGGCTGAAAACTTCACGCTTGATAAACAATTTGGGGTTATCAACGGTTTGGGACAGACTGTTTAA
- Protein Sequence
- MNSDLHSVEVDPLAYDYPQFSNYPQTYPTVQQNTYNYDVKYPINYNNEHTDRKEIIDIKENSNVKENVDQNKQTKVKKETKGKDRKSFLSEKIADSDFPFYGCAVCNISFKLLSELDKHITTHKDRITSYGLRLKNQLKRKKIRKEQKKLKKLKKSLKKSQNGSEIEIKPEDGYIGNTKTVDYKPNELENNVESKLTEVKETSTKEEPQKDNNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCEECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTKHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQIKTDEPQEKSEKLWEDWPIDDSKYTNIKEIVKPIDNDVNSITTVVVEMPKGFMDTEIKKEVDSDGYTSDIKDDIQDSCSDSDYFPSNTWAASPKIDSPPHKKREKLDTPIKCEICEKTISSQSYLQIHMRTHTGEKPFKCYICDRGFITASKMHRHVLTHSESLDDPAMKLEINSDLGTDVKKNKKIKDGIKKKSNQRLKKNRPHACEYCHKRFLHLATLQVHKKSHDGEELVLKCHYCLMKMDDEEALKVHEATHEGPKAYLCTLCGKTYKKRETMMYHRKHHTTDKEYTCDICSKSFPSSRKLEKHIATHRADQYVVRYECPVCAHMFNTKYHIKMHLVTHQKEGLIVEANRNEILAMVLQNARRIPKYPESGVKSTDEQNKKCNICGQVFQHFFYLEEHLKSHGSKIALEDDEKIEEKKHICQVCSKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHIRTIHGAENFTLDKQFGVINGLGQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141089;
- 90% Identity
- iTF_01147540;
- 80% Identity
- -