Ppol009446.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- rst2
- Assembly
- GCA_000836215.1
- Location
- NW:447308-458641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.072 13.0 0.2 3 23 107 127 105 127 0.97 2 15 0.0016 0.082 12.9 2.9 1 23 222 244 222 244 0.98 3 15 2.2e-05 0.0011 18.7 1.5 1 23 250 273 250 273 0.97 4 15 0.022 1.2 9.2 6.3 1 23 278 301 278 301 0.93 5 15 8.9e-07 4.6e-05 23.1 0.4 2 23 438 459 437 459 0.98 6 15 6e-05 0.0031 17.3 1.9 1 23 465 487 465 487 0.98 7 15 0.063 3.3 7.8 6.4 1 23 532 554 532 554 0.96 8 15 1.9 1e+02 3.1 0.8 2 23 562 583 561 583 0.95 9 15 0.011 0.56 10.2 4.8 1 23 589 611 589 611 0.95 10 15 6.5e-07 3.4e-05 23.5 0.6 1 23 617 639 617 639 0.99 11 15 0.0014 0.07 13.1 2.7 1 23 648 670 648 670 0.98 12 15 0.00037 0.019 14.8 2.4 2 23 713 734 712 734 0.98 13 15 0.046 2.4 8.2 6.2 1 23 751 773 751 773 0.95 14 15 1.1e-06 5.9e-05 22.7 0.6 1 23 779 801 779 801 0.98 15 15 1e-07 5.3e-06 26.0 3.1 1 23 807 830 807 830 0.98
Sequence Information
- Coding Sequence
- ATGAACTCAAACCTCCACAGTGTAGAAATAGATCCTCTAGCAACATTTGATTATCCTCAATATTCAAACTACCCACAACAACCATACCCTTCACAATACCAGAATACATATAATTACGaccttaaaatacaatatcctataaattgtaataaagaagatatacatacaaaagaaataacagatatcaaagaaaactccaatgttaaagaaaatgttgatCAAAATAAACAGACGAAAGTTAAGAAAGAAACAAAAGGTAGAGAAAGAAAGAGTTTCCTATCGGAGAAAATAGCTGACAGTGATTTCCCTTTCTACGGTTGTGCGGTTTGCAATATCAGTTTTAAATTGCTGTCAGAATTAGATAAACACATCACAACGCATAAAGATAGAATAACCAGCTATGGTTTGAGATTGAAAAATcaattgaaaagaaaaaaaatccgtAAAGAGCagaagaaattgaaaaaattgaaaaaatctttgaaaaaaatgcaaaacgGTACAGAAATCGATATCAAACCAGAAGATGGTTATATAGGGAATACGAAAACTGTAGATTATAAACCGAATGAAGTTGAAAATAAGTTAGATTCTAAGTTAACAGGGGTCAAAGAAAATTCTACAAAGGATGAACCACAAAAGGacaataatttggaaaaaatgttcaaatgttTTGCATGTCAAAAGCAATTTACATTAAGTTACTACCTTAAGTTACATGTTCGTTCACATACAGatgAAAAACCCTACACATGTGAGGAGTGCGGTCAATGTTTTATCACAGCCAGCAAGCTCGGAAGACATAACAAGAGAATCCATCTAGCTATCCGACACCAGTGCAGAATATGTTACAAATACTTCTCTAGGTTTGAATatctaacaaaacattttgataagAAACATCCAGAAGATAAGTTAGAAGGGGAACCGTACGattatAATGCGATATTGCCTTATTTGAAAGAACTTGAAGAgcaattgcaaataaaaactgaCGAACCACAAGAGAAAAGTGAGAAATTATGGGAAGATTGGCCGATAGATGATTGTAAATATCCTAATATTAAAGAGATTATCAAACCGATAGATAATGCTGTGAACAGTTTAACAGTGGTCGTGGAAATGCCTAAAGGAATAATAGAcacggaaattaaaaaagaaatagactCGGATGGATATAATTCAGATGTCAAAGGGGATATACAAGACAGCTGTTCAGATAGCGATTATTTTCCATCAAATACATGGGCAGCGTCACCAAAAATAGATTCACCGCCGCATAAAAAGCGTGAAAAACCAGATACGCctataaaatgtgaaatatgtGAAAAAACAATAAGCTCCCAAtcttatttacaaatacatatgAGGACACATACAGGGGAAAGaccatttaaatgttatatatgTGATCGTGGATTTATTACAGCGAGTAAAATGCATCGACATGTCTTAACGCACTCTGAAAGTTTAGATGATCCAGCTATGAAATTGGAAATAAATTCAGATGTAGGTACTGATgtgaagaaaaataaaaaaatcaaggacggtataaagaaaaaatccaatcaaagattgaaaaaaaatcgacCCCACGCTTGTGAGTACTGCCACAAAAGATTCCTACATCTGGCAACACTACAAGTGCACAAGAAATCTCATGCTGGTGAGGAGCTAGTGCTGAAATGCCACTTCTGCCTGATGAAGATGGATGATGAAGAGTCTCTGAAGGTCCATGAGGCGACACACGAAGGTCCGAGGGCATATTTATGCACGTTATGCggaaaaacttataaaaaacgGGAAACTATGATGTACCATAGAAAGCATCATACAACAGATAAAGAGTACACTTGCGATATTTGTTCAAAAAGTTTCCCTTCATCTCGTAAACTGGAGAAGCACATAGCAACTCACAGAGCGGACCAGTACGTGGTCAGATACGAGTGTCCTGTCTGTGCGCACATGTTTAATACTAAATATCACATCAAAATGCATTTAGTTACACATCAAAAGGAAGGATTaaTAGTCGAAGCTAACAGAAATGAAATATTAGCTATGGTCTTGCAAAATGCACGTCGGATACCGAAATATCCTGAATCCGGTGTGAAAACATCGACAGacgaacaaaataaaaaatgcaatatttgtGGACAAGTTTTTCAgcattttttctatttagaGGAACATTTGAAAAGCCACGGATCGAAAATAGCTttggatgatgatgaaaaaatcgaagaaaaaaaacatatctgtCAAGTTTGCAGTaagagttttaaattacattattatttgaaattacacAGTTTTACACATACTAAAGAAAAGCCATACATTTGTCAGCAATGCGGGAAAGGTTTTATTACACGGGGTAAATTGAAAAGGCATTTAGAAACACATAGCGgtttgaaaaaatatcaatgtcatatttgttacaaattttttACAAGACCTAGTTATTTAAGAATTCATATTAGGACAATACATGGGGCTGAAAACTTCACGCTTGATAAACAATTTGGGGTAATTAACGGGTTAGGGCAAACTGTTTAA
- Protein Sequence
- MNSNLHSVEIDPLATFDYPQYSNYPQQPYPSQYQNTYNYDLKIQYPINCNKEDIHTKEITDIKENSNVKENVDQNKQTKVKKETKGRERKSFLSEKIADSDFPFYGCAVCNISFKLLSELDKHITTHKDRITSYGLRLKNQLKRKKIRKEQKKLKKLKKSLKKMQNGTEIDIKPEDGYIGNTKTVDYKPNEVENKLDSKLTGVKENSTKDEPQKDNNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCEECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTKHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQIKTDEPQEKSEKLWEDWPIDDCKYPNIKEIIKPIDNAVNSLTVVVEMPKGIIDTEIKKEIDSDGYNSDVKGDIQDSCSDSDYFPSNTWAASPKIDSPPHKKREKPDTPIKCEICEKTISSQSYLQIHMRTHTGERPFKCYICDRGFITASKMHRHVLTHSESLDDPAMKLEINSDVGTDVKKNKKIKDGIKKKSNQRLKKNRPHACEYCHKRFLHLATLQVHKKSHAGEELVLKCHFCLMKMDDEESLKVHEATHEGPRAYLCTLCGKTYKKRETMMYHRKHHTTDKEYTCDICSKSFPSSRKLEKHIATHRADQYVVRYECPVCAHMFNTKYHIKMHLVTHQKEGLIVEANRNEILAMVLQNARRIPKYPESGVKTSTDEQNKKCNICGQVFQHFFYLEEHLKSHGSKIALDDDEKIEEKKHICQVCSKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHIRTIHGAENFTLDKQFGVINGLGQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141089;
- 90% Identity
- iTF_01145416;
- 80% Identity
- -