Pdar017409.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- rst2
- Assembly
- GCA_013186455.1
- Location
- QDHC01002179.1:85825-94909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0014 0.11 13.1 0.2 3 23 94 114 92 114 0.97 2 15 0.0016 0.13 12.9 2.9 1 23 197 219 197 219 0.98 3 15 5.6e-05 0.0044 17.5 1.2 1 23 225 248 225 248 0.96 4 15 0.022 1.8 9.3 6.3 1 23 253 276 253 276 0.93 5 15 1.6e-06 0.00013 22.3 0.5 2 23 411 432 410 432 0.98 6 15 0.00012 0.0093 16.5 2.4 1 23 438 460 438 460 0.98 7 15 0.063 5 7.9 6.4 1 23 505 527 505 527 0.96 8 15 0.87 70 4.3 0.7 2 23 535 556 534 556 0.94 9 15 0.0028 0.23 12.1 4.5 1 23 562 584 562 584 0.95 10 15 4.9e-06 0.00039 20.8 2.1 1 23 590 612 590 612 0.99 11 15 0.0014 0.11 13.1 2.2 1 23 621 643 621 643 0.98 12 15 0.0011 0.085 13.4 2.4 2 23 685 706 684 706 0.98 13 15 0.026 2 9.1 6.2 1 23 723 745 723 745 0.95 14 15 1.1e-06 9e-05 22.8 0.6 1 23 751 773 751 773 0.98 15 15 1e-07 8e-06 26.1 3.1 1 23 779 802 779 802 0.98
Sequence Information
- Coding Sequence
- ATGAATATGCACAACGTAGAGATAGATCCTTTAGCGACATTCGATTACCAGCAGTATCCAAACTACCCGCAATATCCAGTTTCCtaccaaaattataattatgaagacaaaaatatacaatatccTACCAATTGTGAAACAGATGCAAAATCTAAAACATctgaagaaaaaaatgaaatgactttaaaagaaaatgaagataagattaaaaaagatacGAAAGGCAAAAAGAATCTTTTATCGGAAAAGATAAATGATAGTAATTTCCCGTTCTACGGATGTGCGGTTtgcaatattagttttaaattattatcagaaTTGGACAAACATATAACAACTCATAAAGACAGAATAACGAGTTACGggttacgtttaaaaaatcaattgaaaagaaaaaagatacgTAAAGAGcagaagaaattgaaaaaattaaaaaaaagtttaaaaaatgaaacaaattttgaaatcaaacCCGAAGACGGGTATATAGGGAATAAGAAAGCGTCAGATTATGAACTGAAAGACGAAAATATAGGAAAAGAGAATTCTAGTAAGGAATctcaaaaagataataatattgagaaaatgtttaaatgttttgcatgtcaaaaacaatttacattaagctattatttgaaattacatGTTCGATCACATACAGATGAAAAGCCGTACACTTGTGCTGAATGTGGCCAATGTTttataacagctagtaaactGGGTAGACATAATAAAAGGATACATCTAGCTATTAGGCATCAATGTAGAATATGTTACAAATACTTTTCTAGGTTTGAATATTTAACGAAACATTTTGATAAGAAACATCCTGAAGATAAATTAGAAGGGGAACCTTATGattataatgcaatattaccatatttaaaagaattagaggaacaattacaaataaaaactactgaaAAGGAGCCtgaaaaaagtgaaaaattaTGGGAAGATTGGCCTTTAGATGAATCTAATATAGTAAATAAGCCGATAGAAAATGATATAGTAAATGGTATAACTACGGTAGTTGTAGAAATGGGtaatggatgtatggatgaagaaataaaaaaagaaattgacTCTGACGGATATATATCggataatatgaataaagatGTACAGGACAGttgTTCGGATAGTGATTATTTCCCATCAAATACGTGGGCGGCTTCACCAAAAATAGATTCGCCTCCGCAAAAAAAACGACAAAAActcgatttaataaaatgcgaGATATGCGAGAAGAAAATAAGCTCCCAATCTTATTTACAAGTACATATGAGGACACATACAGGAGAAAAACCGTTCAAATGTTATATATGTAATAGAGGTTTTATTACAGCTAGTAAAATGCATAGACATGTACTAACACATTCTGAAAGTTTGgATGATCCAACtatgaaattagaaataaataaagatggaactgatattgttaaaaagaaaaagaaaaggaaTAAAGAcggtacaaaaaaaactaatcaaaaattaaaaaagaatcgACCGCACGCTTGCGAGTATTGCCATAAAAGATTCTTACATCTGGCAACACTGCAAGTACATAAAAAATCTCATGAAGGTGAAGAATTAGTGCTCAAATGTCACTATTGTCTGATGAAGATGGATGATGAAGAGTCTCTGAAGGTCCACGAAGGAACCCACGAGGGTCCGAAGGCATATTTATGTACGATATGTGGAAAAACTTATAAGAAGCGGGAAACTATGatgtATCACAGAAAACATCATACGATAAATAAAGAGTACACATGCGATATCTGTTCTAAAAGTTTCCCTTCGTGTCGTAAGTTAGAGAAGCACATAGCGACGCACAGAGGGGACAGGTACGTGGTGCGCTACGAGTGTCCTGTCTGCGCGCACatgtttaatactaaatatcatattaatatGCATTTGGTTACTCATCAGAAGGAAGGattAATAGTAGAAGCAAATCGTAGCGAAGTCTTAGCAATGGTATTACAAAACGCTCGTCGGATACCAAAATATCCTGAAACCGATACAAAACAAGACaacgaacaaaataaaaaatgtaacatttgcGGACAAATTTTCCAACACTTCTTTTATTTGgaagaacatttaaaaagccACGGTTCAAAAATCGCTTTAGAAAATATCGAAAAAGACGAAGAGAAGAAACATATTTGTCAAATATgtagtaaaagttttaaattgcattattatttaaaattacacagTTTTACGCATACTAAAGAGAAACCATATATTTGTCAGCAATGTGGGAAAGGTTTTATTACGCGAGGGAAATTAAAAAGACATTTGGAAACTCATAgcggtttaaaaaaatatcaatgtcatatttgttataaattcttCACTAGACCGAGTTATTTGAGGATACATATAAGAACGATACATGGGACTCAAGATAACTTCACGCTTGATAAATTTGGGGTAAACATTGGTATGGGACAGacggtttaa
- Protein Sequence
- MNMHNVEIDPLATFDYQQYPNYPQYPVSYQNYNYEDKNIQYPTNCETDAKSKTSEEKNEMTLKENEDKIKKDTKGKKNLLSEKINDSNFPFYGCAVCNISFKLLSELDKHITTHKDRITSYGLRLKNQLKRKKIRKEQKKLKKLKKSLKNETNFEIKPEDGYIGNKKASDYELKDENIGKENSSKESQKDNNIEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTKHFDKKHPEDKLEGEPYDYNAILPYLKELEEQLQIKTTEKEPEKSEKLWEDWPLDESNIVNKPIENDIVNGITTVVVEMGNGCMDEEIKKEIDSDGYISDNMNKDVQDSCSDSDYFPSNTWAASPKIDSPPQKKRQKLDLIKCEICEKKISSQSYLQVHMRTHTGEKPFKCYICNRGFITASKMHRHVLTHSESLDDPTMKLEINKDGTDIVKKKKKRNKDGTKKTNQKLKKNRPHACEYCHKRFLHLATLQVHKKSHEGEELVLKCHYCLMKMDDEESLKVHEGTHEGPKAYLCTICGKTYKKRETMMYHRKHHTINKEYTCDICSKSFPSCRKLEKHIATHRGDRYVVRYECPVCAHMFNTKYHINMHLVTHQKEGLIVEANRSEVLAMVLQNARRIPKYPETDTKQDNEQNKKCNICGQIFQHFFYLEEHLKSHGSKIALENIEKDEEKKHICQICSKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHIRTIHGTQDNFTLDKFGVNIGMGQTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141089;
- 90% Identity
- -
- 80% Identity
- -