Pdar013886.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- ZNF526
- Assembly
- GCA_013186455.1
- Location
- QDHC01005425.1:176942-189874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2 97 3.8 0.1 2 23 468 489 467 489 0.87 2 18 0.0023 0.18 12.4 0.1 1 23 499 522 499 522 0.95 3 18 0.011 0.89 10.2 1.8 1 21 642 662 642 663 0.94 4 18 0.028 2.2 9.0 3.8 2 23 727 748 726 748 0.95 5 18 1.6 1.3e+02 3.5 2.2 1 23 760 784 760 785 0.90 6 18 2.5e-05 0.002 18.5 0.3 2 23 791 814 790 814 0.97 7 18 0.054 4.3 8.1 0.2 1 23 820 842 820 842 0.93 8 18 0.0017 0.13 12.8 3.3 1 23 848 870 848 870 0.98 9 18 1.6 1.2e+02 3.5 0.0 2 19 881 898 880 901 0.85 10 18 0.13 10 6.9 0.1 1 23 973 995 973 995 0.96 11 18 1.6 1.3e+02 3.5 7.2 1 23 1002 1024 1002 1024 0.95 12 18 0.0011 0.085 13.4 1.8 1 23 1065 1088 1065 1088 0.95 13 18 0.00074 0.059 13.9 0.8 1 23 1095 1118 1095 1118 0.98 14 18 0.048 3.8 8.2 0.1 2 23 1140 1162 1139 1162 0.95 15 18 5.8e-05 0.0046 17.4 1.1 2 23 1188 1210 1187 1210 0.94 16 18 0.0015 0.12 13.0 0.2 1 23 1223 1245 1223 1245 0.96 17 18 7.2e-05 0.0057 17.1 0.1 1 23 1251 1273 1251 1273 0.98 18 18 0.00012 0.0093 16.5 0.7 3 23 1281 1302 1279 1302 0.95
Sequence Information
- Coding Sequence
- TATTTCAGATCAACGCTAGGTTTCGACGTAGACATAAACTCGATTACTGGCGACCAAACAGTAGCATTGAACGAAAACATTTATCATTACCTCCTAAATTCTGAACTAAATTATCAAACTGATCCACAATTAGGTACTGAAAGTTTCCAGCGTACACCAGAACAAGGTGCACATAGTCCGGACGGTTTTGTCTACGTTTTAGACGACGGCACGCAGATACGAGCCTCGCAGATACATTTTGACAACGAAGATCCCCCTGTAGACCTTACAGCGGAACAAATACCATTCGTCAAATACGCCAATGATAGTGCCGATGAACACGAAGTCGAAGATCAAAGTATagaaaatacgaaaaaaataaacatcgtcGAAAGTCCTGTTAAAAGATGGGAAAGTAGAACTTCCAGTCCTAGATGCAGCTTTGTTAATAGCCTACCGTTCAAACTAGTCTGTTCTAACACGTCCAATTTCGAAGCTCAATTTACCAAATATTTAGAATCGAGTAtgacaaaaacatttacaactCTCAGTCCTGTTACCAATAGAAATAAATCCcctaaaagtttaataagtgATAATTACAAGAATTACGATGACAACTATCAGGCTCAGCGAAACAAAGATGATTTCGCGAGTTATACACGCGAAGAAATACTCAATATGTTTAAAGACTCGCCCGTCGCATCACTACCTTATGAAGAGAACCAAAATCATAACGAGAAAAGACGCCACGTACGTAAAACCGACCCATCCCGACTTCATAAGAATTGGAGTAATAGACCTTACGTAGACGTAAAACCTGGAGAGAAAGGAAGACAAAACTGTTTCATTTGTGGTAAAATCGATAATAACGtggaaaaattgtatttattcgATAACGAGGACCAAAAGCTACATAGATGTACATCGCCGAGGAATTATCCGACtcaacttaaaataatatgcgaCCATTGTTTGGCTGATAACTTTAAACCGAGTCGAATGAAGAGTCCTACACAATCTCTCAGTTCGGATGAGTTCTTAGTTATTAAGAACAACCAGCAATTCATATTTCAAAAggttattgattttaaagtgGCTCCTATTTCGGAAACCTCGGATAAAAGGGATCTCAACCTTCTCGAAGATTCCCAAGAGAGTGATAAATTAGAATTTGTTAAAGTAGAGATAGGTTCTGATGGAGAAATTGTAACGAAATGTATTGACAACGATACTAGATCTTCGGATGACGTTATAATTGTGAAAGACGAGAAAAAGGATAGTTCCAGTGATGTGGAAATAATAGAGAATGATCCAGATATTGATGATCACATTATAGATAACTTGGAGGAAGCTGATGAGGATGTTAAGGCGTTTTTAGGGAAATATCATTGCGATGATGATACTGAGATTAAGGAATTAAAATGCAGGTTCTGTGACCGAATATTTGAAGAAATTAGTCAAGTCATAGACCATGGTGAGGAGCATAAGCATAACTTAGATGATGGAGAAGTATTCCCTTGTCCGTTGTGTGATtatggttattctaattttaaatggtTGAAAGGTCATCTTAAAGCAGCTCATGATAAGACAAAAGTTACCGAAATAAAAGACGAAGACCACGAGGGTGACAAAGGTAAAACCACACCATCGTCGTCGCCAGTCGCCAAGAGAACGAGAAGTGCGGTAAAAAAAGTCGAGACAGAAAACGATAAAGCCTCTCCAGAGAAGATAGAACGCACGAATAATATAACTACGAAACTTGAATCTaaCGGGTCAACATTGACTGTGAACACGGAGGTGAAGCAGGAATGTCTAGACAGCAGTGATGATGAAGCCATCTGGATCGTGCAGACTGTGGGCCACGAACCATCAGAGCAGCTGGAGAACTTGCTGAAAGTGGCTGCGGGTGAAGACAAAGATGagaaaaatagaaagaaaCATAAATGTAACAACTGCAGTCAAATATTCCCAACCGCGGAGAGCCTAATCTCCCACAAGTGTCGTCGGAGGGGACGCAAGCGCAGAGGCCCAGTCAAAGACGACTCGGTCATACTCGTTCCTTCTGAAGAGGACTTTCTGCGGaGGGCTCAAGGAAGACCTAAACAAAAGCAGTCAGGTGTTGACAATGATTTACTGGttattAGACCTCGTAAGAGAAAGAACCGTGAGCCGACTTCTGACCCTCAAATAGTGACCTGCCACAACTGCAATGAATCCTTTACATCTAAAGTTAGACTCAAGTTTCATATGCAATTCCACGACGCGACTAACCTTTTGACAGCCGAAGGTCAGTACTCGTGCCCGGAGTGCGAGGGCGCGCACTTCCCTACTGAAAGCGAACTCTTTGATCACGTGCATTTCCAGCACCACAAGCAAAAGCGCTGGCAGTGTCCAGTAGAAGATTGCGGAAAGACATTTTATCTAAGAGCAACGCTAACAAAACACAGCAGAACGCATACGGATACGCGGCGATACGTGTGCGTAACGTGTGGGAAACGGTTCCTTGACAAGCAGACTCTTGACGAGCATGGAGTTACACATTTACAGATAAAGCCGTTCCAGTGCCACATCTGCTTGAAGCAGCTGACGCGGCGATCCCGTTTACGTATGCACCTCCGCGCACACGAGGAAGAACTCGCGCCGCGGCTTGTGCTCGTATGTGCCGCGTGCGGCCGGGCCTTTCGCGACACTAATGACGCTCAGGACCACGCTAGCAAATCGAAGGAGTGCATAGAGCAGTTAAGTCCGTCTGTGAAAGAAGAGAACGAAGTGTCAGTACTGCTCTCCCCCACTACTGGTTTAGTTTCACATACTGTTGCGGTTGTTGCTAAATCCCCGCAAATGGAGTGCGGTCCGGAGGGAGACGCGCTGCTCGCGACGCTGACGGACTTCGCCAAGATCATCATACGTGTGGTAGAGATCGAGAAGGCCTTCCGTTGCGAGTATTGTGAAGATGTTTTCTATTTAGAAGAAGCATTGAACAGTCATCGAGTTATCCACAAAGGTgttaaaaatcctttcactTGTCACATCTGTAAAGTCAGCTTTGCTACTTATTCCAGATGTACAACACACAAAACTACCCACGGTTTCTACAAGCGTTCTCTAGCAGACTGCAAGAAGGCTGCCAAGTGTCCCGGCACTTCGGAAGCCGGGCCTGCCGCTACTGGCATTTTAGGTTATGGTGGCTTTCCTGTGGTTAAACATTTCTTATGCGAGGATTGCGGACGTTCCTATCTGCATTGGACATATCTACAAGTACATCGACGTATGAAACACGCTAATGAGAACTTTCTATATAAATGCAACCAGTGCGATCTGACATTCCCTAACAGTTGGAGCGTGGCATACCATAGGAAGAAGATGCACGGCAAGAGTGGACCCGAGGACGGCGGTGGTACCACCAAGATAGCCAGAGATGACTATAGGATACCTTGTAGAGATTGCAGCATGGTGTTGCCGAACAAAACAGCACTTTATGCGCATAGACAGAAGGAGCATAGTGATATGACACTTTCTATGAGCGATGAACAAGGTGCAGATGCGCAAGTGCGTACACACGCGCCGCTAGCGACATCTTGCAGTAAATGCGGTCATAACTTTACCGAGCCCAGCGCGCTGCAGCGACATCTCAAAGAGGTGCACGGCCACGAGGGCTGCGGGCGCGGGGAGCGGCGCGCGCACGCGTGCGCGGTGTGCGGCCGCGCCTTCCGCTCCGCCTCCGTGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGCCCCTACCCCTGTGACGTCTGCGGGGTCGCCTTCCGACGGTCGACAGCAATGCGCAACCATCGTCTGATCCACTCCGGCGTGCGCGCGTGGGCGTGCGCGCGCTGCCCCAAGCGCTTCCGCATACGATCCGACCTGCGCACGCACATGCGGCTCAAACATCCCACTTACATGATTGTATTCGAGATGAAAGGTTTAAATCCAACTTATGAGGAAATAATGCAACACATCAGTGAAAATAATATCACTCACGGACGTATTATAGAGATCACCAAGATGACATTTGAAAAGGGTACAAGCAGTATAGTGCCGACCACAGCGCGCGCCCTGTCTTTACTCGGCCACGTGCCGCGCACCAAGATCACCTGCGACGCGCCCACGCCTGTTAATCTAGATATGTTCCAACCGGCGCGCCGCGGGCGTGGTATAGCGAAGAATCCTAAAAGACCAAAGATCCTCCAAGGCCCGCTCGGCGATGCTGACCCCAATGCGTACTCCGTGCCTATCGCTTGCGGCTCCAATCAgGAGTTGCCAGAATTAAATGTGCAACTGTTGAGCTCGGCCGCGCTGCACGGCCAGGTGGTGCAGATACAACTTGACGATAATATATggaataaaacacaataa
- Protein Sequence
- YFRSTLGFDVDINSITGDQTVALNENIYHYLLNSELNYQTDPQLGTESFQRTPEQGAHSPDGFVYVLDDGTQIRASQIHFDNEDPPVDLTAEQIPFVKYANDSADEHEVEDQSIENTKKINIVESPVKRWESRTSSPRCSFVNSLPFKLVCSNTSNFEAQFTKYLESSMTKTFTTLSPVTNRNKSPKSLISDNYKNYDDNYQAQRNKDDFASYTREEILNMFKDSPVASLPYEENQNHNEKRRHVRKTDPSRLHKNWSNRPYVDVKPGEKGRQNCFICGKIDNNVEKLYLFDNEDQKLHRCTSPRNYPTQLKIICDHCLADNFKPSRMKSPTQSLSSDEFLVIKNNQQFIFQKVIDFKVAPISETSDKRDLNLLEDSQESDKLEFVKVEIGSDGEIVTKCIDNDTRSSDDVIIVKDEKKDSSSDVEIIENDPDIDDHIIDNLEEADEDVKAFLGKYHCDDDTEIKELKCRFCDRIFEEISQVIDHGEEHKHNLDDGEVFPCPLCDYGYSNFKWLKGHLKAAHDKTKVTEIKDEDHEGDKGKTTPSSSPVAKRTRSAVKKVETENDKASPEKIERTNNITTKLESNGSTLTVNTEVKQECLDSSDDEAIWIVQTVGHEPSEQLENLLKVAAGEDKDEKNRKKHKCNNCSQIFPTAESLISHKCRRRGRKRRGPVKDDSVILVPSEEDFLRRAQGRPKQKQSGVDNDLLVIRPRKRKNREPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDATNLLTAEGQYSCPECEGAHFPTESELFDHVHFQHHKQKRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELAPRLVLVCAACGRAFRDTNDAQDHASKSKECIEQLSPSVKEENEVSVLLSPTTGLVSHTVAVVAKSPQMECGPEGDALLATLTDFAKIIIRVVEIEKAFRCEYCEDVFYLEEALNSHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADCKKAAKCPGTSEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSVAYHRKKMHGKSGPEDGGGTTKIARDDYRIPCRDCSMVLPNKTALYAHRQKEHSDMTLSMSDEQGADAQVRTHAPLATSCSKCGHNFTEPSALQRHLKEVHGHEGCGRGERRAHACAVCGRAFRSASVRNEHLRVHTGERPYPCDVCGVAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHMRLKHPTYMIVFEMKGLNPTYEEIMQHISENNITHGRIIEITKMTFEKGTSSIVPTTARALSLLGHVPRTKITCDAPTPVNLDMFQPARRGRGIAKNPKRPKILQGPLGDADPNAYSVPIACGSNQELPELNVQLLSSAALHGQVVQIQLDDNIWNKTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149010;
- 90% Identity
- iTF_01143304; iTF_01149797; iTF_01141871; iTF_01149010;
- 80% Identity
- -