Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:1320725-1336808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0025 0.14 12.3 0.1 1 23 532 555 532 555 0.95

2 17 0.027 1.5 9.1 1.0 2 21 679 698 678 699 0.93

3 17 0.03 1.7 9.0 3.8 2 23 763 784 762 784 0.95

4 17 2.3 1.3e+02 3.0 1.6 1 23 796 820 796 821 0.89

5 17 2.8e-05 0.0016 18.5 0.3 2 23 827 850 826 850 0.97

6 17 0.059 3.3 8.0 0.2 1 23 856 878 856 878 0.93

7 17 0.0018 0.1 12.8 3.3 1 23 884 906 884 906 0.98

8 17 1.2 69 3.9 0.0 2 20 917 935 916 937 0.86

9 17 0.14 7.8 6.9 0.1 1 23 1009 1031 1009 1031 0.96

10 17 1.7 98 3.4 7.2 1 23 1038 1060 1038 1060 0.95

11 17 0.0012 0.066 13.4 1.8 1 23 1101 1124 1101 1124 0.95

12 17 0.0008 0.046 13.9 0.8 1 23 1131 1154 1131 1154 0.98

13 17 0.052 3 8.2 0.1 2 23 1176 1198 1175 1198 0.95

14 17 0.00013 0.0075 16.4 1.0 2 23 1222 1244 1221 1244 0.94

15 17 0.00081 0.046 13.9 0.4 1 23 1258 1280 1258 1280 0.96

16 17 7.8e-05 0.0044 17.1 0.1 1 23 1286 1308 1286 1308 0.98

17 17 0.00013 0.0072 16.4 0.7 3 23 1316 1337 1314 1337 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0025	0.14	12.3	0.1	1	23	532	555	532	555	0.95
2	17	0.027	1.5	9.1	1.0	2	21	679	698	678	699	0.93
3	17	0.03	1.7	9.0	3.8	2	23	763	784	762	784	0.95
4	17	2.3	1.3e+02	3.0	1.6	1	23	796	820	796	821	0.89
5	17	2.8e-05	0.0016	18.5	0.3	2	23	827	850	826	850	0.97
6	17	0.059	3.3	8.0	0.2	1	23	856	878	856	878	0.93
7	17	0.0018	0.1	12.8	3.3	1	23	884	906	884	906	0.98
8	17	1.2	69	3.9	0.0	2	20	917	935	916	937	0.86
9	17	0.14	7.8	6.9	0.1	1	23	1009	1031	1009	1031	0.96
10	17	1.7	98	3.4	7.2	1	23	1038	1060	1038	1060	0.95
11	17	0.0012	0.066	13.4	1.8	1	23	1101	1124	1101	1124	0.95
12	17	0.0008	0.046	13.9	0.8	1	23	1131	1154	1131	1154	0.98
13	17	0.052	3	8.2	0.1	2	23	1176	1198	1175	1198	0.95
14	17	0.00013	0.0075	16.4	1.0	2	23	1222	1244	1221	1244	0.94
15	17	0.00081	0.046	13.9	0.4	1	23	1258	1280	1258	1280	0.96
16	17	7.8e-05	0.0044	17.1	0.1	1	23	1286	1308	1286	1308	0.98
17	17	0.00013	0.0072	16.4	0.7	3	23	1316	1337	1314	1337	0.95

Sequence Information

Coding Sequence: ATGGAACCTCAGCTTCCACCGTTAATACTTTGTATGGAGAATATGAACGGAGAAGAAGTATCACTTAGTATCGGACCCAATGATGATTTTCAAACATTCCTGGATAAAGCCAAaTCTACTCTAGGTTTCGATGTGGATATCAACTCGATTACTGGCGACCAAACTGTatcattaaatgaaaacatttatcattaCCTTCTAAATTcggaattaaattatcaaactgATCCACAATTAGGTAATGAAAATTTCCAACATACACCAGAAGAGGGTACACATAGCCCTGATGGGTTTGTGTACGTTTTAGACGACGGCACACAGATACGAGCATCgcaaatacattttgataaCGATGATCCCCCTGTAGATCTCACAGCTGAACAAATACCATTCGTAAAATACGCCAATGATAGTACGGATGAAAACGAAGTTGAAGATCAAAGTattgaaaatactaaaaaaataaacatagtcGAAAGTCCTGTTAAACGTTGGGAAAGTAGAAATTCCAGTCCTAGATGTAGTTTTGTGAACAGTTTACCCTTCAAACTTGTCTGTTCCAACACCTCCAACTTTGAAGctcaatttacaaaatacttaGAAACGAGTACTACGAAAACATTTACTACTTTGAATACTGTTGCCAATAGAAATAAGTCCCCTAAAAGTTTGATaagtgaaaattataaaaattacgatgAAAATTATCAACCTCAACGTAACAAAGATGATTTCGCAAGTTATACAAGAGAAGAAATTCTCAATATGTTTAAAGATTCCCCTGTCGCATCCTTGCCTTACGAAGAGAATCAGAATCACAACGAAAAAAGACGTCATGTACGTAAAACTGACCCATCTCGACTTCATAAAAATTGGAATAACCGACCTTACGTAGATGTAAAACCTGGAGAGAAAGGAAGGCAAAACTGTTTCATTTGTGGTAAAATCGATAACAACGTAGAAAAATTGTACCTATTTGATAATGAAGATCAAAAGCTACATAGATGTACATCGCCCAGAAATTATCCGActcaacttaaaataatatgcgaTCATTGTTTGgctgaaaattttaaaccgAGTCGTATGAAAAGTCCAACGCAATCTCTTAATTCCGATGAGTTcttggttattaaaaataaccagcaatttatatttcaaaaggttattgattttaaattggcCCCTGAAGCTGTAGATAAACGGGATCAAAACCATCTAGAAGATTCTCAAGAGAATGAGAAACTTGAATTTGTGAAAGTGGAAATAGGTTCCGATGGAGAAATTGTAACTAAATGTATTGATAATGATACTAGATCATCAGATGATGTTATTATTGTGAAAGACGAGAAAAAGGATAGTTCTAGTGATGttgaaataatagaaaatgaacCTGATATCGATGATcatattatagataatttgGAAGAAGCCGATGATGATTTCAAAGAATTTTTGGGGAAATATCATTGCGATGATGATACTGAGATTAAGGAATTGAAATGCAGGTTCTGTGACAGCATCTTTGAAGAAATAAGTCATGTAATAGATCATGGCGAGGAGCACAAACATAACTTAGACGATGGAGAAGTATTTCCTTGTCCTTTGTGTGACTAtggttattctaattttaaatggtTAAAAGGACATCTCAAAGCAGCTCATGACAAGACAAAgattactgaaataaaaaatgaagatgATAACGATGAAGACAGAAATGGGGGTAAAACTTCTCCATCTTCATCACCTGTCGCCAAGAGAACTAGAAGTGCAATTAAAAAGGTCGAAACGGAAACAGAAAAAGCGTCGCCAGAGAAGATAGAGCGCACGAATAATATTACGACGAAACTTGAATCTAACGGTTCGACATTGACTGTGAACACGGAAGTAAAGCAGGAGTGTTTGGACAGCAGTGATGATGAAGCTATCTGGATCGTGCAGACTGTTGGCCATGAGCCCTCGGCGCAGCTGGAGAACTTGCTGAAAGTGGCCTCGGGCGAAGACAAAGAAGAGAAAAAtaggaagaaaaataaatgtaataactgCAGCCAAATATTCCCAACTGCGGAGAGTCTAATCTCCCACAAATGCCGTCGCCGAGGACGCAAGCGCAGAGGCACGGCTAAAGATGATTCGGTTTTACTCGTACCCTCTGAAGAGGACTTTCTTAGGAGAGCTCAAGGAAGACCTAAACAAAAACAGGCAGGAGTTGACAATGATTTACTGGTtgttAGACCTCGTAAAAGAAAGAACCGTGAGCCGACATCTGATCCGCAAATAGTTACCTGTCACAACTGCAATGAATCTTTTACCTCTAAAGTTAGACTTAAGTTTCACATGCAATTCCACGACGCGACTAACCTTTTGACCGCCGAGGGTCAATACGCGTGTCCGGAGTGCGAAGGCGCGCATTTCCCAACTGAAAGCGAACTCTTCGATCACGTCCACTTTCAGCATCATAAGCAGAAGCGCTGGCAATGTCCTGTAGAAGATTGCGGCAAGACATTCTATCTTAGAGCTACGTTAACAAAACATAGCCGCACGCACACAGACACGCGTCGATACGTGTGTGTGACGTGCGGTAAACGATTCCTTGACAAGCAGACCCTCGATGAGCACGGAGTAACACATCTACAGATAAAGCCGTTCCAGTGTCATATCTGCTTGAAGCAATTGACGCGCCGGTCTCGTCTGCGTATGCATCTCCGCGCTCACGAGGAGGAACTCGCACCGCGGCTTGTACTCGTGTGTGCCGCGTGTGGCCGCGCCTTCCGCGACACTAATGACGCACAGGATCATGCTAATAAATCAAAGGAATGCATAGAGCAGTTAAGTCCAGCTGTCAAAGAAGAGAACGAAGTGTCAGTACTGCTGTCCCCGACTACTGGACTGGTCACTCATACTGTTGCGGTTGTTGctAAATCCCCACAAATGGAGTGTGGACCAGAAGGTGACGCATTACTAGCAACACTAACAGACTTCGCCAAGATCATTATACGTGTCGTCGAGATTGAGAAGGCATTCCGCTGCGAATACTGTGAAGATGTTTTCTATTTAGAAGAAGCTCTAAACAGTCATCGTGTTATCCACAAAGGTGTAAAAAATCCATTCACCTGCCACATCTGTAAAGTCAGCTTCGCAACGTATTCTAGATGTACCACACACAAAACAACTCATGGTTTCTACAAGCGTTCTCTCGCCGACTGCAAGAAGGCGGCCAAGTGTCCCGGCTCCTCTGAAGCAGGGCCCGCGGCTACTGGCATTTTAGGTTATGGTGGATTTCCTGTCGTCAAACATTTCTTATGCGAGGATTGTGGACGGTCGTACTTGCACTGGACATATCTACAGGTTCATCGAAGAATGAAACACGCTAACGagaattttctttacaaatgtAACCAGTGTGACTTGACCTTTCCCAACAGTTGGAGTGTGGCGTATCACAGGAAGAAGATGCACGGCAAGAGTGGACCTGAAGACGGCGGTGGTACCACCAAAATAGCCAGAGATGACTATAGGATACCATGCCGGGATTGTAGTATGGTTTTACCAAACAAAACAGCACTTTATGCACATAGACAGAAGGAACATAGTGATACGACCATGAGCGATGAACAAGGTACGGACGCGCAAGTGCGCACGCACGCGCCACTCGCGACCTCATGCAGCAAGTGCGGACACAACTTTAACGAACCCAGCGCGCTGCAGCGACACCTCAAAGAGGTGCACGGTCACGAGGGGGAGACGCGCGGCGAGCGGGGGAGGTCGCACGCATGCGCAGTGTGCGGACGCACTTTCCGCTCCGCCTCCGTGCGCAACGAACACCTGCGCGTACACACCGGAGAGCGACCATATCCTTGTGACGTCTGCGGGGTTGCTTTCCGACGGTCGACAGCGATGCGTAACCATCGCCTGATCCATTCAGGGGTACGTGCGTGGGCTTGCGCGCGCTGCCCCAAGCGATTCCGCATACGCTCCGACTTGCGCACGCACATGCGACTCAAACATCCTACTTATATGATTGTATTTGAGATGAAAGGTTTAAACCCTACATATGATGAGATAATGCAACACATCCGAGATAACAACATCACCCAGGGTCGTATCATAGAGATCACCAAAATGTCCTTCGAAAAGGGTACAAGCAGTATAGTGCCGACAACAGCACGTGCCCTCTCTCTGCTCGGACACGTGCCTCGCACAAAGATCACTTGTAAGACACCCACGCCTGTTAATATAGatatgttcCAACCGGCGCGTCGAGGTCGGGGTATTGCTAAGAACCCTAGAAGACCTAAGATCCTACAAGGACCGCATGGCGACTCTGAGTTAGACGTCAACGCGTACTCCATGCCCATCGCATGCGGTACTGGACagGCGCTACCAGAACTGAATGTGGAACTGTTAAGTGAAGGCGCGCTGCACAGCGGCCAGGTTGTTCAAATACAGCTTGACGACAACATCTGGAATAAAACCTAG
Protein Sequence: MEPQLPPLILCMENMNGEEVSLSIGPNDDFQTFLDKAKSTLGFDVDINSITGDQTVSLNENIYHYLLNSELNYQTDPQLGNENFQHTPEEGTHSPDGFVYVLDDGTQIRASQIHFDNDDPPVDLTAEQIPFVKYANDSTDENEVEDQSIENTKKINIVESPVKRWESRNSSPRCSFVNSLPFKLVCSNTSNFEAQFTKYLETSTTKTFTTLNTVANRNKSPKSLISENYKNYDENYQPQRNKDDFASYTREEILNMFKDSPVASLPYEENQNHNEKRRHVRKTDPSRLHKNWNNRPYVDVKPGEKGRQNCFICGKIDNNVEKLYLFDNEDQKLHRCTSPRNYPTQLKIICDHCLAENFKPSRMKSPTQSLNSDEFLVIKNNQQFIFQKVIDFKLAPEAVDKRDQNHLEDSQENEKLEFVKVEIGSDGEIVTKCIDNDTRSSDDVIIVKDEKKDSSSDVEIIENEPDIDDHIIDNLEEADDDFKEFLGKYHCDDDTEIKELKCRFCDSIFEEISHVIDHGEEHKHNLDDGEVFPCPLCDYGYSNFKWLKGHLKAAHDKTKITEIKNEDDNDEDRNGGKTSPSSSPVAKRTRSAIKKVETETEKASPEKIERTNNITTKLESNGSTLTVNTEVKQECLDSSDDEAIWIVQTVGHEPSAQLENLLKVASGEDKEEKNRKKNKCNNCSQIFPTAESLISHKCRRRGRKRRGTAKDDSVLLVPSEEDFLRRAQGRPKQKQAGVDNDLLVVRPRKRKNREPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDATNLLTAEGQYACPECEGAHFPTESELFDHVHFQHHKQKRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELAPRLVLVCAACGRAFRDTNDAQDHANKSKECIEQLSPAVKEENEVSVLLSPTTGLVTHTVAVVAKSPQMECGPEGDALLATLTDFAKIIIRVVEIEKAFRCEYCEDVFYLEEALNSHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADCKKAAKCPGSSEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCDLTFPNSWSVAYHRKKMHGKSGPEDGGGTTKIARDDYRIPCRDCSMVLPNKTALYAHRQKEHSDTTMSDEQGTDAQVRTHAPLATSCSKCGHNFNEPSALQRHLKEVHGHEGETRGERGRSHACAVCGRTFRSASVRNEHLRVHTGERPYPCDVCGVAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHMRLKHPTYMIVFEMKGLNPTYDEIMQHIRDNNITQGRIIEITKMSFEKGTSSIVPTTARALSLLGHVPRTKITCKTPTPVNIDMFQPARRGRGIAKNPRRPKILQGPHGDSELDVNAYSMPIACGTGQALPELNVELLSEGALHSGQVVQIQLDDNIWNKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149010;
90% Identity: iTF_01140377;
80% Identity: -