Psmy008891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
gtf3a
Assembly
GCA_030142225.1
Location
JARQST010000455.1:414831-419861[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3.4e-05 0.0025 18.3 0.0 2 23 932 953 931 953 0.97
2 17 6.8 5e+02 1.7 0.4 1 19 959 977 959 980 0.90
3 17 0.83 61 4.5 1.3 2 23 986 1007 985 1007 0.95
4 17 6.3e-05 0.0046 17.5 1.2 3 23 1016 1037 1015 1037 0.98
5 17 0.0052 0.38 11.5 2.1 1 23 1044 1067 1044 1067 0.95
6 17 0.00013 0.0093 16.5 0.7 1 23 1073 1096 1073 1096 0.94
7 17 1.7 1.3e+02 3.5 2.5 2 23 1104 1124 1104 1124 0.94
8 17 1.9e-07 1.4e-05 25.5 2.1 2 23 1130 1151 1129 1151 0.97
9 17 4.1e-06 0.0003 21.2 0.3 1 23 1157 1179 1157 1179 0.99
10 17 0.00085 0.062 13.9 2.1 2 23 1191 1213 1190 1213 0.95
11 17 0.011 0.78 10.5 2.5 1 23 1219 1242 1219 1242 0.96
12 17 0.082 6 7.7 5.6 2 23 1264 1286 1263 1286 0.95
13 17 0.0012 0.088 13.5 1.2 2 23 1293 1315 1292 1315 0.96
14 17 0.00041 0.03 14.9 2.8 2 23 1323 1344 1322 1344 0.96
15 17 0.0016 0.12 13.1 2.3 1 23 1350 1373 1350 1373 0.96
16 17 0.44 32 5.4 3.2 2 23 1380 1401 1379 1401 0.96
17 17 0.013 0.94 10.2 2.6 1 23 1407 1429 1407 1429 0.98

Sequence Information

Coding Sequence
ATGAGTGTCTCTGAGGAGACTACTGTATATTTCCCCTATGGGGATGTGGAAGAGGAGGATCGTGTTAAAGGTACATTGGACGAAGCTTCTGTCTATGGTGATAATGAGAAAGTGCAACAGAACGATACTGTGGAGTCTGGAGTTCAAAATTCTACCAAGGATGGGAAATCTCAGTCCACCCAGGGTAACTCACCTTCCTCTGGACAGTCTAACCAAGAGAAATTCAGACCCTTGGGCAAGAATTCAGCGTTACCTAAGAGCAGTTCGGATGTATTGACACAGCAAAGTTTGCATAGTGATTCGTTATCGAAGAGTACATCATCAAAAGTGCAATCTGCTAAACAAGTGAATATTGTACAGACTTCGAGCACCAAGAATCaagGTCGTAGACGAGAATCACAAGCTGATTACAGTAAAGCAACAAGCTCAATGTCACCAGGACGTTCTGTTAATGTCCCTGTATCAAATAATGTGGAAAAGATAACATTGCAACAGAATTCTAAGGTAAATAATGCGGAAAATGACGAAACTCTAGATCTAGAGTTACATCGTAGTGGAAATCAAGAGAAGTTATTAAGTACCAATGACAATATTAATCTTACATCGCAAGACAAAAAGATTTCtgcaattaaaacaaataaattaacacCCATCTCCGTCAATGAGAAATCGGTGTGTCAAATAAAAACGATAAATGATTTGAAGAAGGCAACACCACGAGTAAAATTCCTTACGGATGAGCCTAAGAGTTTAACTGAATTCAGGAAGTTGCATGCACCTAGCACAACAAACCCACCTACGCATTCAATCAAAAAAACAGTACAAACTAAAGCATTGATACTGGAAGAAACTAGACAACAATTAAAGAAGTATTGTCGCACATGCGCCGGCTTGAAATTACCTCTCGTGGACATATTCAGTAAAAAGGGCATACAGATGCGACTGAATCAGCAAATGAAGCATTTGGAAGTAATTAATCAACAAGATAGCTTATCAACGCAGATGTGCATGGATTGCATATGCGATTTAAAGATGAGTTACAAATTCTTCATGCAAATTAAAAAGGCTGAGGTTAAGCTTAAATCAATTTACATAAGCCTAGCCGATGCAAatgcaaatgaaataaagtcTAGAAACCTGAATGTCGATAAAATACCAGTATCTGGACCATCTTGTACCATCAAGGAAGATCCTGATAGAAGTACAGAATCATTGCGAGACTTACTGTCCGGTGCTAACGAAGTAAACCTGGACGACAGTATACCAAAAATATCAGCAATATTCTCGCTGCAAGACTTACAAGAAACCCCCAAGTCAAATGACgagatgaattttgaaataaatataaaaaccgAACCGGAAGAGCACGAGGAATACCCACCGTTCAATCAGAGTGACGACAACGACTCTATAGAAGAGTTTGATCCAGAAGATCCACCTTATCAAGTTGACAGCTCAGACGCCGGCGAATCTGAGGATGAACTGGAAAGTCGTAATTTACagaatttacgaaattctcaAATGGTACAAATGCAACAAGCTACAGAATTGGCAACTTCAATTGCAAGGTCTAATCCATCTTCGAGCAAGCTATCTGGTGCAGATGCTAAAAAGGATAGCAACCCTGTAATCTACAAGTACGATACTGTTTGTAAATCCTACGTCAAGGTGGATACTTTGGAAAAAGATGGAGCTCATTGCAATACAAATGACAGTTTGAATAGTAAGATTGATAATGATAGTCATGGACAtgtaagagaaggacagacacATCCTAACATCTTAAAGAGGAAGTTACCACCCCCAATAAAAAAGGATCCGCACCCTGATACCGACGTCAGTAGCGATGCACTGGATATTCTGAATTCTAGTGGTGGTCCGAAGGATTCAAAGATGCAAAGGTTAAATGTACAAAATGCTTTGAATATTGGTCATCCTGAAGAGGAAGGAATAATGTACGTGACAGTGAAGGGATCAAAGCCAAATGAATTGCTTCTGGTAAAGGTGAAGAAGATGGACAAGAATATTGATAAGAAAGACGAGAAGTGTCTCAGTAAAAAAACCGTGGAGGTTAAGCCCGTGGAtaagattttgaagaaataCGAAAGTCTTACTGGTAAGGACAAAGATTTGTTTCCTGAGAGATTTAAGAAAACTGATATAAGGGAGCAGATCATCGAAGAGCAGATCGAAGAGTATAAGAAGAAGCGCGAGAAGGTTTTGGGCGGTACTGCTGTGGGGTTTTCAAATTCCCTGAAACTCGAAGATGGCCAAGTGCGTTTTGTTAAACAAAATGATAGTCAGGCTCCTCGGCGTTCTTTGTCGACTGATAGCAATTCGATGATAAGGAAAGATTCTGTGAAAGGTAACGAGGATGAGAAATCGGAGGAAGTGGATCTAAAGGATGTGATGGAGTTAACAAGAACTTTGGAGGACAAAAGTCCTGGTGATAAGACTTACGTTAATACGGAGGAGTATCTGTCGCGTTTAGCAAAGTTGAAACAAAAGTGGGAGGAAGccaagaagaagagggaaTCACTCCAAAAGGAACTTGATCAATCATACACCGAAGGAAATATGGAAAAGCTTGCGAGGATCCTGGGTGAACGTGAAAAGAATCTACAGGACTTTCAGGATTACTTGAAGCAaaggaaaattgttatcacAAGGCTTAAGGATGAGGATATCATTTCACTTTACGAGGACAGAAATAATACAACCTTGAAGAAAAGTCTTCCTGATTTAATAGATGAGACCCAGCCACTGGATTATATACCAGAAGAGAATTATCTGGAGTGTGATTATTGTCCTGAAACATTTGCTACGAGAGAAGCATTGGAAGAGCATTTGAAGATCCATGATTACAAAATAATGCACTACTGTGAAGATTGCATGGAAGAATTCCCAACTAATAAAGCGAAGAGGAATCACAACATATCTTGCTTGAAAAAGCTTATCTGTAAATATTGTGACTTCATGCTGGATTCCAAAGGGAAGAAGAGACAGCACGAACAAAAACATTGTGACAGCATGGACGGACAGTTGTGTGACATTTGTGGTGAAAAGTTCAAGCATCAAGGTACCTTGGATCAACATATAAAAACCCAGCACATGAGTTGGGAgaagatttttcaatgtcCCAAGTGTCCCAAGAAATTTGCTTTTAAACAGAAATTaagttttcatttaaaatcgGTGCATACTACTTTGCGTGCTTACTTGTGTGAGGATTGCGGAGCAGACTTTAAGAATCCTGCTAGTCTGAGACATCACAGAATACGAAAGCATCAGCCAGTGGGTAATAAACGTGAGTGTCCAGTATGTCACAAGTTAGTACCATTTTACAGTCTGTCGAAGCACATGCATACTCACAAAGCTTACACAATACAGTGTCCGCACTGTGATAAAATGTTCAAAAATAGTTCCACCTTAAAGCAGCACGTAAGGATACATGAAGATCAAAGACAATTCAGGTGTGACACGTGTGGTGTTGGCTTTAACAGAAGGGATGGTTTGAGATTGCACATGCGAGTCCATGAAAAGACAGACAGCAGAGGTTTGAAGGAGTGTTCTTGTCAGGTATGCGGAGAAAAGTTCCCTAACCACTCCATGCTCGTCATCCACAGGAACAGAGTGCACAAGGATGGCAGACAATATACCTGTCACATATGTAACAGATCTATGATCTCTACGAGGTCACTTGAATGGCATATGTCTCATATTCACAACGAGTCACTACCAGGAACACAAAAGGACGATGGTGAAACTGGCTCTGAGAAAAAGAGGGTTACCTGCTGTCACTGTAACAAAACCTTCAAGACAGAAATGATCCTGAGGACACATATTAAGAATACACATATGGAAAAGGATCCACTAAAGTGTACAGAGTGTGAACAAACATTCACATCGGATATAAGATTGAGGCATCATATGATGGTTGCTCATAACAGACTCGAAGGCACTTTAGAATGTCCACATTGTCCTAAAAGATTTGTCAATCATCTCAGATTGAAAACTCACATGATATCCCACTCCGAGGAGAGACCTTACACTTGTGAGATATGTGGATTTAACCTAAAAACTAAAATACAGTTGATAAAGCATCATCAGAATAGGCACAGCGATGAGAGACCCTTGCAATGTAGATACTGTCCTTGGAGATGTAAACAAGTTAGTGCCCTGGTCTGTCATGAGAGAACTCATACGAATGAACGGCCCTACTCCTGCAGTGTATGTAGACAACGATTCAAGTACCTGGGTGACAAGAACAAGCATGAGAGACGACACGAGAGTCTTGGTGGTTCAGGATTCAAAAGGATAGTGGCTGGCAGGAATATTAAGCAAATAAAACCTCAAGAGGAGGAGACATCCTCTTCGCAGGACCCAGAAGATTTTGATCAGGGTCAGACATCGTTACATACAGAAGATGATTATAGTTCAAAGTTCGATGATGACCAAATAATCAAGTATGAAGCACAAGATATCGAAGAAGAATCCTATGAGCAGAGTTACGAACAGGATTACGAAGAGACTTCGAGGGAGGCTTCAGAAGCAGCTGAAGTAATAATGAGCATGGAAGATACAACAGTCTACACAGAAGAAGTGACAGCTGACAATATTGAAACTGCTGAGATGATAGCCGATGAAATGATGACAAgtcaaattttacaatcaGGTACCGTAGTTCATTTACAACAACAGGACGATTCAGGAAAGATTCAGGTGATACCTGTAATGTTATCATTGCCTGATTTGACCGATAGCAATGCAGAGGTTAATCTAGCAACTGCTTCAATCATGTACAATAATTGA
Protein Sequence
MSVSEETTVYFPYGDVEEEDRVKGTLDEASVYGDNEKVQQNDTVESGVQNSTKDGKSQSTQGNSPSSGQSNQEKFRPLGKNSALPKSSSDVLTQQSLHSDSLSKSTSSKVQSAKQVNIVQTSSTKNQGRRRESQADYSKATSSMSPGRSVNVPVSNNVEKITLQQNSKVNNAENDETLDLELHRSGNQEKLLSTNDNINLTSQDKKISAIKTNKLTPISVNEKSVCQIKTINDLKKATPRVKFLTDEPKSLTEFRKLHAPSTTNPPTHSIKKTVQTKALILEETRQQLKKYCRTCAGLKLPLVDIFSKKGIQMRLNQQMKHLEVINQQDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIYISLADANANEIKSRNLNVDKIPVSGPSCTIKEDPDRSTESLRDLLSGANEVNLDDSIPKISAIFSLQDLQETPKSNDEMNFEINIKTEPEEHEEYPPFNQSDDNDSIEEFDPEDPPYQVDSSDAGESEDELESRNLQNLRNSQMVQMQQATELATSIARSNPSSSKLSGADAKKDSNPVIYKYDTVCKSYVKVDTLEKDGAHCNTNDSLNSKIDNDSHGHVREGQTHPNILKRKLPPPIKKDPHPDTDVSSDALDILNSSGGPKDSKMQRLNVQNALNIGHPEEEGIMYVTVKGSKPNELLLVKVKKMDKNIDKKDEKCLSKKTVEVKPVDKILKKYESLTGKDKDLFPERFKKTDIREQIIEEQIEEYKKKREKVLGGTAVGFSNSLKLEDGQVRFVKQNDSQAPRRSLSTDSNSMIRKDSVKGNEDEKSEEVDLKDVMELTRTLEDKSPGDKTYVNTEEYLSRLAKLKQKWEEAKKKRESLQKELDQSYTEGNMEKLARILGEREKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNTTLKKSLPDLIDETQPLDYIPEENYLECDYCPETFATREALEEHLKIHDYKIMHYCEDCMEEFPTNKAKRNHNISCLKKLICKYCDFMLDSKGKKRQHEQKHCDSMDGQLCDICGEKFKHQGTLDQHIKTQHMSWEKIFQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGTQKDDGETGSEKKRVTCCHCNKTFKTEMILRTHIKNTHMEKDPLKCTECEQTFTSDIRLRHHMMVAHNRLEGTLECPHCPKRFVNHLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVAGRNIKQIKPQEEETSSSQDPEDFDQGQTSLHTEDDYSSKFDDDQIIKYEAQDIEEESYEQSYEQDYEETSREASEAAEVIMSMEDTTVYTEEVTADNIETAEMIADEMMTSQILQSGTVVHLQQQDDSGKIQVIPVMLSLPDLTDSNAEVNLATASIMYNN