Basic Information

Insect: Syrista parreyssii
Gene Symbol: gtf3a_1
Assembly: GCA_030142615.1
Location: JARQTG010000275.1:583203-588217[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.2e-05 0.00081 19.7 0.1 2 23 927 948 926 948 0.97

2 17 6.6 4.3e+02 1.7 0.4 1 19 954 972 954 975 0.90

3 17 0.8 52 4.5 1.3 2 23 981 1002 980 1002 0.95

4 17 6e-05 0.0039 17.5 1.2 3 23 1011 1032 1010 1032 0.98

5 17 0.005 0.32 11.5 2.1 1 23 1039 1062 1039 1062 0.95

6 17 0.00012 0.0079 16.5 0.7 1 23 1068 1091 1068 1091 0.94

7 17 1.7 1.1e+02 3.5 2.5 2 23 1099 1119 1099 1119 0.94

8 17 1.8e-07 1.2e-05 25.5 2.1 2 23 1125 1146 1124 1146 0.97

9 17 3.9e-06 0.00025 21.2 0.3 1 23 1152 1174 1152 1174 0.99

10 17 0.00082 0.053 13.9 2.1 2 23 1186 1208 1185 1208 0.95

11 17 0.01 0.66 10.5 2.5 1 23 1214 1237 1214 1237 0.96

12 17 0.079 5.1 7.7 5.6 2 23 1259 1281 1258 1281 0.95

13 17 0.0013 0.081 13.4 1.3 2 23 1288 1310 1287 1310 0.96

14 17 0.0004 0.026 14.9 2.8 2 23 1318 1339 1317 1339 0.96

15 17 0.0016 0.1 13.1 2.3 1 23 1345 1368 1345 1368 0.96

16 17 0.42 27 5.4 3.2 2 23 1375 1396 1374 1396 0.96

17 17 0.012 0.8 10.2 2.6 1 23 1402 1424 1402 1424 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.2e-05	0.00081	19.7	0.1	2	23	927	948	926	948	0.97
2	17	6.6	4.3e+02	1.7	0.4	1	19	954	972	954	975	0.90
3	17	0.8	52	4.5	1.3	2	23	981	1002	980	1002	0.95
4	17	6e-05	0.0039	17.5	1.2	3	23	1011	1032	1010	1032	0.98
5	17	0.005	0.32	11.5	2.1	1	23	1039	1062	1039	1062	0.95
6	17	0.00012	0.0079	16.5	0.7	1	23	1068	1091	1068	1091	0.94
7	17	1.7	1.1e+02	3.5	2.5	2	23	1099	1119	1099	1119	0.94
8	17	1.8e-07	1.2e-05	25.5	2.1	2	23	1125	1146	1124	1146	0.97
9	17	3.9e-06	0.00025	21.2	0.3	1	23	1152	1174	1152	1174	0.99
10	17	0.00082	0.053	13.9	2.1	2	23	1186	1208	1185	1208	0.95
11	17	0.01	0.66	10.5	2.5	1	23	1214	1237	1214	1237	0.96
12	17	0.079	5.1	7.7	5.6	2	23	1259	1281	1258	1281	0.95
13	17	0.0013	0.081	13.4	1.3	2	23	1288	1310	1287	1310	0.96
14	17	0.0004	0.026	14.9	2.8	2	23	1318	1339	1317	1339	0.96
15	17	0.0016	0.1	13.1	2.3	1	23	1345	1368	1345	1368	0.96
16	17	0.42	27	5.4	3.2	2	23	1375	1396	1374	1396	0.96
17	17	0.012	0.8	10.2	2.6	1	23	1402	1424	1402	1424	0.98

Sequence Information

Coding Sequence: ATGAGTGTCTCTGAGGAGACTACTGTATATTTCCCCTATGGGGATGTGGAAGCAGAGGATCCTACTAAAGGGAGATTGGATAAAGCTTCTATCTATGCTGGTAATGAGAAAGTGCAAGAAAATGACACTATGGAGCCTGCAGTTAAAAATTCTACCAATGATGGAAAATCTCAGTCAACCCAGGGGAACTCAACTGCTTCTGGGCAGCCTAACCGAGAGAAACTCAAACCGTTGGGCAAGAATTCAGCGTTACCTAAGAGCGGTTCGGACGTACTGATACAGCAAAGTTTGCAAAGTGATTCGTTGTCGAAGAATATATCATCGAAAGTGCAATCTGCTAAACAAGTGAATGTTGCACAGACATCAAGCACTAGGAATCAAgGTCGTAGACGAGAATCACATGCTGATTACAGTAAAGCAACAAGTTTGATATCTCCCGGATGTTCTGCTAATGTCTCTGTACCAAACAATGTGGAAAAGATAACATTGCGACGAAATTCTAAGGTAAATAAtgcagaaaatgaagaaattgcaAATCTAGAATTACATCGTAGTGGAAATccagagaaattattaaataccaacgataatattaatctCATATCACAAGACAAGATTTCTGCaattaaaacgaataaattaacACCCATTTCCCAAGAGAAATCGGTATGTCAAATAAAAACGATAAACGATTTGAAGAAGGCAACACCACGAGTCAAATTCCTTACAGATGAGCCTAAGAGTTTAACTGAATTCAGGAAGTTACATTCATCTAGCACAACAAACCCACCTATGCATTCAATCAAAAAAACAGTACAAACTAAAGCATTGATACTGGAAGAAACTAGACAACAATTAAAGAAGTATTGTCGCACGTGCGCCGGCTTGAAATTACCTCTTGTAGATATATTCAGTAAAAAGGGCATACAGATGCGACTGAATCAGCAAATGAAGCATTTGGAAGTAATTAATCAACAAGATAGCTTATCAACGCAGATGTGCATGGATTGCATATGCGATTTAAAAATgagttacaaatttttcatgcaaataaaaaaggcTGAAGTTAAACTTAAATCGATTTATATAAGCCTAGCCGATGCAAATGCTAATGAAATAAAGTCTAGAAATCTGAATGTCGATAAAATACCAATGTCGGGACCATCTTGTACCATCAAGGAAGATCCTGATAGAAGTACAGAATCATTAAGAGACTTACTCTCCGGTGCTAACGAAGTGAACCTGGATGACAGTATACCAAAAATATCAGCAATATTCTCTCTGCAAGACTTACAAGAAACCCCCAAGTCAAATGAcgagatgaattttgaaataaatataaaaaccgAACCGGAAGAGCACGAAGAGTATCCACCATTTAATCAAAGCGACGACAATGACTCTATAGAAGAGTTTGACCCAGAGGATCCACCTTTTCAAGTTGACAGCTCAGATGCCGGCGAATCTGAGGATGAACTGGAAAGTCGTAGATTACagaatttcagaaattctCAAATGCAACAAGCGGCAGAATTGTCAGCTTCAATGGCGAGgtctaatgaattttcgagCAACCCACCTGGACGAGATACTAAAAAAGATAACAAGCCGATGATCTACAAGTACGATACTGTTTGTAAATCCTACGTCAAGGTGGATACTTTGGAAAAAGACGAAGCTTACTGCAATAcaattgacattttgaaaagcaAGATCGATAGTGATAGTCATGGATATGTAAGAGAAGGACAGACACATCCTAACATCTTGAAGAGGAAGTTACCACCCCTAATAAAAAAGGAACCGCACCCTGATACAGACGTCAGTAGCGATGCACTGGATATTCTGAACTCTAGTGGTGGTCTGAAGGATTCAAAGATGCAAAAGTTAAATGTACAAAATGCTTTGAATATTGGATCTCCTGAAGAGGAAGGAATAATGTACGTGACAGTGAAGGGATCAAAACCAAATGAATTACTACTGGTAAAGGTGAAGAAGATGGACAAGAATATTGAtaagaaagacgaaaaatgtCTCAGTAAGAAAACCATGGATGTTAAGCCCGTGGATaagattttgaagaaatacgAAAACCTTAGTGGTAAGGAGAAAGATTTATTTCCCGAGAGATTCAAAAAAACTGACATAAGGGAGCAGATCATTGAAGAGCAGATCGaagagtataaaaagaagCGTGAGAAAGTTTTGGGCGGTACTGCTGTGGGGTTTTCAAACACTTTGAAACTTGAAGATGGTCAAGTGCGTTTTGTTAAACAAAATGATAATCAGGGTTTTCGACGTTCTTTCTCCACTGATAGTAATTCGATGATAAAGAAAGATTCTGTCAAGGGAAACGAAGATGAAAAACCGGATGAAGTGGATCTAAAGGATGTGATTGAGTTAACGAGAACTTTGGAAGACAAAAGTCCAGATGATAAGACTTATGTTAATACCGAGGAATATCTGTCGCGTTTAgcaaaattgaaacaaaagTGGGAAgaggcaaagaaaaagaaggaatcgCTTCAAAAGGAACTTGATCAATCATACACCGaaggaaatatggaaaaacTTGCAAGGATTTTGGGTGAACGTGAAAAGAATCTCCAGGACTTTCAGGATTACttgaaacaaaggaaaattgtTATCACAAGGCTTAAGGATGAGGATATCATTTCACTTTATGAAGACAGAAATAATACTACCCTGAAGAAGAGTCTTCCTGATTTAATAGATGAGACCCAGCCGCTGGATTATATACCAGAAGAGAATTATCTGGAGTGTGATTACTGTCCTGAAACGTTTGCTACGAGAGAAGCTTTGGAGGAACACTTGAAGACCCATGACTATAAAATAATGCATTATTGTGAAGATTGCATGGAAGAATTCCCAACAAATAAAGCGAAAAGGAATCACAACATATCTTGCTTGAAAAAGCTTATCTGTAAATATTGTGACTTCATGCTGGATTCcaaagggaagaagagacaGCATGAACAAAAACATTGTGACAGCATGGATGGACAGTTATGTGACATTTGTGGTGAAAAGTTCAAGCATCAAGGTACCCTGGACCAACATATAAAAACTCAACACATGAGTtgggagaaaatttttcaatgtcccAAATGCCCCAAAAAGTTTGCTTTTAAACAGAAATtaagttttcatttaaaatcgGTGCATACTACTTTACGTGCTTACTTATGTGAGGATTGTGGAGCAGATTTTAAGAATCCTGCTAGTTTGAGACATCACAGAATACGAAAACATCAGCCTGTGGGTAATAAACGTGAGTGTCCAGTATGTCACAAGTTAGTACCATTTTACAGTCTATCGAAGCACATGCATACTCACAAAGCTTACACAATACAGTGTCCGCACTGTGataaaatgttcaaaaatAGTTCCACCTTAAAACAGCATGTAAGAATACATGAAGATCAAAGACAATTTAGGTGTGACACATGTGGTGTTGGATTTAACAGAAGGGATGGCTTGAGATTGCATATGCGAGTCCATGAGAAAACAGACAGTAGAGGCCTGAAGGAATGTTCTTGTCAGGTATGCGGAGAAAAGTTCCCTAACCACTCCATGCTCGTCATCCACAGGAACAGAGTGCACAAGGATGGCAGACAATATACCTGTCACATATGTAACAGGTCTATGATCTCTACGAGGTCACTGGAATGGCATATGTCTCACATTCACAACGAGTCACTACCAGGAACACAAAAGGATGATGGTGAAACTGGGTCTGAGAAGAAGAGGGTTACCTGCTGCCACTGTAACAAGACTTTCAAGACGGAAATGATCCTAAGGACACATATTAAGAATACACATATGGAAAAGGACCCACTGAAGTGTACGGAGTGCGAACAGACATTCACATCGGATATAAGATTGAGGCATCATATGATGGTTATTCATAATAGACTCGAAGGCACTTTAGAATGTCCACATTGTCCTAAAAGATTTGTTAATCATCTGAGACTGAAAACTCACATGATATCCCACTCCGAAGAAAGACCTTATACTTGTGAGATATGTGGATTTAATCTAAAAACTAAAATTCAGTTGATCAAACACCATCAGAATAGGCACAGCGATGAGAGACCCTTACAATGTAGATACTGTCCGTGGAGGTGTAAACAAGTTAGTGCCCTGGTCTGTCATGAGAGAACTCATACAAATGAACGGCCCTACTCCTGCAGTGTATGTAGACAACGATTCAAGTACCTGGGTGACAAGAACAAGCATGAGAGACGACACGAGAGTCTTGGTGGTTCAGGTTTCAAAAGAATAGTGGCTGGTAggaatattaaacaaattaaagtTCAAGAGGAGGAGACATCCTCTTCGCAAGACCAAGAAGATTTTGATCAGGGTCAACCATCGTTGCATACAGAAGAGGATTATAATTCAAAGTTCGATGATGACCAAATAATCAAGTATGAAGCACAGGATATCGAAGAAGAATCCTATGAGCAAAGTTACGAGCAGGATTACGAAGAGACTTCGCGGGAAGCTTCAGAAGCAGCTGAAGTAATAATGAGTATGGAAGATACAACGGTGTATACAGAAGAAGTGACAGCGGACAATATTGAAACTGCTGAGATGATAGCCGATGAAATGATGACAAGTCAAATTCTACAATCAGGTACCGTAGTTCATTTACAACAACATGATGATTCAGGAAAGATTCAGGTGATACCTGTAATGTTATCATTGCCTGATTTAACCGATAGCAATGCAGAGGTTAATCTGGCAACTGCTTCAATCATGTACAATAATTGA
Protein Sequence: MSVSEETTVYFPYGDVEAEDPTKGRLDKASIYAGNEKVQENDTMEPAVKNSTNDGKSQSTQGNSTASGQPNREKLKPLGKNSALPKSGSDVLIQQSLQSDSLSKNISSKVQSAKQVNVAQTSSTRNQGRRRESHADYSKATSLISPGCSANVSVPNNVEKITLRRNSKVNNAENEEIANLELHRSGNPEKLLNTNDNINLISQDKISAIKTNKLTPISQEKSVCQIKTINDLKKATPRVKFLTDEPKSLTEFRKLHSSSTTNPPMHSIKKTVQTKALILEETRQQLKKYCRTCAGLKLPLVDIFSKKGIQMRLNQQMKHLEVINQQDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIYISLADANANEIKSRNLNVDKIPMSGPSCTIKEDPDRSTESLRDLLSGANEVNLDDSIPKISAIFSLQDLQETPKSNDEMNFEINIKTEPEEHEEYPPFNQSDDNDSIEEFDPEDPPFQVDSSDAGESEDELESRRLQNFRNSQMQQAAELSASMARSNEFSSNPPGRDTKKDNKPMIYKYDTVCKSYVKVDTLEKDEAYCNTIDILKSKIDSDSHGYVREGQTHPNILKRKLPPLIKKEPHPDTDVSSDALDILNSSGGLKDSKMQKLNVQNALNIGSPEEEGIMYVTVKGSKPNELLLVKVKKMDKNIDKKDEKCLSKKTMDVKPVDKILKKYENLSGKEKDLFPERFKKTDIREQIIEEQIEEYKKKREKVLGGTAVGFSNTLKLEDGQVRFVKQNDNQGFRRSFSTDSNSMIKKDSVKGNEDEKPDEVDLKDVIELTRTLEDKSPDDKTYVNTEEYLSRLAKLKQKWEEAKKKKESLQKELDQSYTEGNMEKLARILGEREKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNTTLKKSLPDLIDETQPLDYIPEENYLECDYCPETFATREALEEHLKTHDYKIMHYCEDCMEEFPTNKAKRNHNISCLKKLICKYCDFMLDSKGKKRQHEQKHCDSMDGQLCDICGEKFKHQGTLDQHIKTQHMSWEKIFQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGTQKDDGETGSEKKRVTCCHCNKTFKTEMILRTHIKNTHMEKDPLKCTECEQTFTSDIRLRHHMMVIHNRLEGTLECPHCPKRFVNHLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVAGRNIKQIKVQEEETSSSQDQEDFDQGQPSLHTEEDYNSKFDDDQIIKYEAQDIEEESYEQSYEQDYEETSREASEAAEVIMSMEDTTVYTEEVTADNIETAEMIADEMMTSQILQSGTVVHLQQHDDSGKIQVIPVMLSLPDLTDSNAEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00770568;
90% Identity: iTF_01131030;
80% Identity: -