Psmy001548.2
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- JARID2
- Assembly
- GCA_030142225.1
- Location
- JARQST010000090.1:27037-33801[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4 1.4e+04 -3.3 0.5 49 83 148 181 146 182 0.58 2 2 1e-22 1.9e-19 70.0 0.0 6 89 1352 1433 1348 1433 0.94
Sequence Information
- Coding Sequence
- atggTATTGAGTCGAAatgacaagagaaaaaggaaagaaggagaCCTTGTGGATCTCATGGATCCACTATCAGAATCGCCTAATAGAACAAAGGTTCACGCGCAAAGAAAATTTGCGCAAGGAGCGGCAACAGTTTTTAATCCTGCACACACTcctattaaagaaaaagagaaggtgaAGCCTGCTATGATTACAGAATTGATAACACATAAACGCCCAAACACTGAAGACTTCCTTACATTTCTTTGCTTTCGAGGAACACGAATATTACCGCCGAGTCTCAATTTCTTCAACGTCGGACCTAAGAAAGGTTCTTCGGATCCAGAACCAGAACAGGCATCAACAGATAATAGTCCATCGTCATCAACGATGTCAACACCGTCAATTGAAGTGCCGAAGGTGACAACGTGTCAGAAATCTCCAGGTAAAATAAAGAGCAACGtaactgaaaagaaaaaggtgcctaacagaatacaaaaaaatattaagaaatacaAGGCAACGTCGTCCACAGTTCAAgcattgaagaaaaagtatcaGGAACAGCGTCTTGCCAAACAAAGGATTAAGAATAAATTCAAAGCCTCATGCGTCATGAGAACGCGCTCGGCGACGGAGCAGGCAATTTTAAAATCTGCCAGCAAACTAGAACCAAGAAAATTCCTCCCTAAGGTTGAAACAAAAAGACACGGTTTACGAAGCAGCGCACTTGCAGATAAAACAAAACGCGCAAATCTAACGAAAGTTAAATCAGTACCATCGAAaccaaagaaaaggaatcTTACAAAGGATAAGAGTAGTGATTCGTCAGATACCGAATCGTCGTCAGAAGAAGATGTGCCTCTCGTGAAACCAACGCCGCAAATAAAGCGCCCCTTAAAGTCCACAGTTCCCAAAAAGATCTGCACCAGGAGCAAATCGGAAATGCGAAGAATAACGAGATCGCATAGCGAAACTATTTCAGCACAAACTCTATCTAGGCGACCGTCtaggaaaacaaaagaagctGCTGCCGTTTATATGGAAATCCTTGGAAGAAAGTTAATTAGTCCCGATTTAGAGAATGATGATAATCTATCGGTGGATAGTTTTCCCGAATTACCAAATGCTCGTAGAATCGCCCAAACTGAGAACGAGATCAGAGCCAAAGTAAAGCAAACGACAAAACTCAGCACTAATAAAGAAAGCAAGAGCGAAGCTTCTACTAACAATGTCAAACGTGCTGATAAAAGTAAACCAGAAAAAGTTGTAACGAAGAGCAAAAGGCTGATGAGAGTACAAAAGTATTGCGAGTTAGATAGCGAGGAAGAATCAGAAAGTTCCATTGAATCTAATCAAACACGACCTATTACCAGACGAAGTGTTAGTAAACTGAAAAAACCAATTTCCAGGAGCCTGAGATCTTCCTCACGAAATGCTACGACGAAACCTGAGCctcaaaataatacaaagagCAATACAAGCAAAGACAAAGCCATGGTAAAACGTAAACGAGAACAAAATACTGCCAAAGTGCCacctcaaaaaaataattcaacgaAGCAGAAGGTGCAAAAGAATAAAACCGATAGTATGGAATCCGATGAAGAAACATTAGGAATGCTATTAGAtaaactgaaaagaaaaaaagaatccaagGAACCGGAAGCACCGACTCCTCGTACAGACCGGAAGaagacagaagagaaaaatgaaaacgtacCTCCAACGGAAGTGGTAAATAACAAGCTTGACTCTTCTAAGATATCCGACGATGAGGAGTCTTTCagaggattttcgaaaaaggcAATTTCAAAAGTTCTTAATTCCTGCCATACTCACGTCAGTGCCAATCTCCTTGCATCCGAAGAAGCTGATGGGAAAATGGATGTGCTTAAAACACAAGACACGCCCCAAACCAGCAATTCGGATTCgagggaaaagaaatatacgaTTATAGAAAATGATAGTCTAGCACCAGTAATAACAATACCAAGTTATCCCTTCGTTAAACCAGTACAAGAACTAACTATTAATTTGGATCACAAAACAGTAACCAATTTGCAAATACCAATTGTGACAAAGTTAGATAGAAAGTGTAATCATGATTCGAATGATACTACGGTTAACATAATTGATATGCCATTACCAGCATCTCTGGCACGTAAAGAACGTGTTAATATGTCAACAGaacaaattgaaaagtggCTCAATGAAAGTTCAATGGctaaagaagaaagtaaagtCGAAATGGAAACAGTGTCCAACTTTAAATATGACATTGGTGAAAAAGTCAAGGCAGACATCACGCATTTATCAATTCCCACTAGAATTCAGCATTTAGTACGTCCTGTTAATGTGACACTATCAAAGTTAGCTGAAAAGGCAAATTCAAAGGATCGTATAGCATTACAAAGTAGAATTATACCAACGCTTATAACAGCTACTCAATCTATTCCATTAAAACTACAAAACATACCAActaacagaaataaaattaatgctgacattaaagaaattattaaaggaCGTAATATGAAAACTAGTAAGGATTCTTCTTTAGGAGACGACAGTGATGCTGTGTCAAAGTCTGATCAGAATTCAGTCGACGGTTCACCTGAGAAAAGATCATCTCCAGAgaagaaatcaatttttcaaccACGCAAACCCTTTCTGCCAAAGGTCAAGGAGCGCAAGGGTATAACCCCAAATGCTAATGCATTTTCCCCAGAGAACGAAAGTAGTGTTTATGCTTTTGAGAGTGATACAGAAACTCCCATAAGTACGCCATTCCGGCGAAAACTTAAAGAAGGTAATAAGGCAAACTCTGTTTGCTCAACTACGGAGGATGAATTGATGAAAGCTGTGGAGGAAGTGGTGAAACCCAATGAGGAATCATTAAAAACTGAGGACGAAGCATCAAGAGTCAATGACGTTATAGTTAAAACTGAGAACGAGCcacaaattattaaaaatcctaTAGCTCCAGCTACGATTAGTGTTAATAAGTTTCAACTACCGAAGAACTTTGCTAGCTTAGCTAATGTTCAAGTTTTACCATTAGATAAACTTACAACCAGTTGGAGCAATGTTAACTGTAGTGCTTCTATAGCAGTACAGGTTAACCTCGATGAACAGTCTCAGGATCCGCAACTGGTGGTGAGTGAGGAGAATGATCAACAAAAGAGCACTGAGATATCCACGCAGACAGAGAgtaataatgacaatgatgatgataatgatgggCAATTGTTCTACATTCCATTACAAGCAGTGACGAGGAATGGACCAAATTTAGTTCAAGGTCAACAATTGATACAAGGAGTTGCTGTTAAATTAGGGACCGAAGGTCCAACTGGACCCAATCAAAGAGTACTATTACGTGCTAAATTGGTTACCAAACCACCTGTATCCGTTGCACGATGTCCTCCAGTTGGTACGGTACAACCTACGACTCGTGCACCACCAACTTTATCGGCACAGACAACTGTGGAGCAACCAATTGCATCAACGTCTGTTGTATCCACACCGTCAACTTCTACTTTTCAACAACCTCCGTCTATAGTGCAAATTTCAACTAGACAAACTACTTCTAATCTACAAAGTTCTAGTAGACAGGCAACTACTGTAGCAGCAAcggcaacaacaacaacaacgacgACCACAGTAACGTCTTCCGAGTCGAAAGTCACGAAATCTCCAAAAatgacgagagaaagaaaagcttCTGTCGATTCggtgaaaaatggaaaaagGTCACAGTCGAAAACTAAGCATAAAATCTCAGAATTCTGCTCGCCCACTAACGACACTACATTTCCAATTGCGCTAGAGTCAAGTAAAGAAGCTCGACTTGTCGAAGCTCCAACTTTTCATCCAactgaaaaagattttcaagatCCACTGGAATACATTGATAAGATACGACCAATCGCTGAGAAATTCGGTATCTGCCGCGTAGTACCTCCACCTAACTTTAAACCGGAATGCAAGGTATCCGATGACATGCGATTCACAGCGTACAATCAATACGTGCATCGTATGCTTCACAGATGGGGACCtaatgtaaaagaaatgatGGCTATAAAGAAATATCTTGCTACACAAAGCATAACGTTAACTCATCCACCATGGatcGGTGGCATGGAAGTAGATCTGCCCCACTTATATCAGACAGTACAGAGTTTAGGTGGACTGAAGGAAGttattgagaagaaaaaatggcagaaaGTTGCCGACGGTATGAAAATACCAAAATCAGCACAAGATCGCGTGACCAAATTAGATGACATCTATTGTAAATACCTATTACCCTATGACACATTATCACAGGaggaaagagaaaaattgttcgaCGAGGTAGAAACGGAATGGACGAAACACGAGAGCAAAGCATTAATGAGACAAGATGCTCAGTCCAATGATAacgacgaggaggaagaggacgaCAGCTCTGACGAAATCGAGGAATGTATCGTGAAAGGTAGAAACATGCCGCTCAACGCTTTTTACCGAATTGCACGCAACACGCAACGTATGTGGTTCGGCGAGAATCAGCGTTCCGGAAGTGAGGCAGAGGGTGCTTCGGCTGACGAGGTGGAGAACGCATTTTGGAAACACGTTGCCGAAAGGAAGCGTCACGTATGCGTCCACGCAGCCAGCATTGACTCCAGTGGCCGTGGCTTTGGATTCTCCGTTGCTAAGAACAGCCCCTTTGCCAGGCACCCTTGGAATCTTAAAGTGCTTACTAACAATGCTGGGTCGGTGCTCAGAGCTTTGGGACCACTAATGGGTGTAACTGTACCAACGCTCCACGTTGGGATGTTGTTCAGTGCCTGCTGTTGGTATCGGGATCCGCATGGCTTACCCTGGATAGAATATTTGCATACTGGGGCTAAAAAGATTTGGTATGGTATACCTGACGAGCACAATAATAACTTTAGGGAAGCACTCTCGAAGATGGTACCTAGGTACTGCAAGAATAAGACTATTTGGCTGCCATCCGATACTGCCATGGTACCGCCGGAAATGTTAGTCAAGAACGGCGTACCTCTGTGTCAGACGGTGCAGGAACCTggtcaatttattattgtatttcctAAAGCATTTACTTCGAGTATTTGTACTGGTTACGTGGTCTCAGAGAGTGTATATTTCGCGCAGTCTTCTTGGCTGGAAACTGCTGAACAAGTATTCAAGgACATACAAGATAGTTGTGAGCCAACGATATTCTCTTTCGAAAGACTACTGTTCAGTATTATCAATGATTCTAGATCTCATATCGATGTACTTAAACAGattttacCAAGCGTCATAAAAATTCGTGATCGAGAAATAGACTATCGTAAGCAATTGGAGTACTTGGGTCTGATCGATACTGAGAGGCTACCACTGCCTGATAgtggaaaacgaaaaaaggggaaaaaggTGAACGATGATGATGGCGATTTTGAATGTGAAACATGTCGGGCCAACTTGTTTGTTTCTTTGGTGAACAATTCGCAGGATGACAGTGTTTACTGTCTTCCTCATGCCCTTCATTTGCTTATCAGAAAGAAACAGGTTCTCAAGCATTGCACACTTATGTACACCTACAGTGAGGACGAACTGGACGACCTGATTCACAAGCTGGAAGACAGGATCGAAGCCAAATCTAAGAAGACTAATCAAATCAGACAAgctaaatga
- Protein Sequence
- MVLSRNDKRKRKEGDLVDLMDPLSESPNRTKVHAQRKFAQGAATVFNPAHTPIKEKEKVKPAMITELITHKRPNTEDFLTFLCFRGTRILPPSLNFFNVGPKKGSSDPEPEQASTDNSPSSSTMSTPSIEVPKVTTCQKSPGKIKSNVTEKKKVPNRIQKNIKKYKATSSTVQALKKKYQEQRLAKQRIKNKFKASCVMRTRSATEQAILKSASKLEPRKFLPKVETKRHGLRSSALADKTKRANLTKVKSVPSKPKKRNLTKDKSSDSSDTESSSEEDVPLVKPTPQIKRPLKSTVPKKICTRSKSEMRRITRSHSETISAQTLSRRPSRKTKEAAAVYMEILGRKLISPDLENDDNLSVDSFPELPNARRIAQTENEIRAKVKQTTKLSTNKESKSEASTNNVKRADKSKPEKVVTKSKRLMRVQKYCELDSEEESESSIESNQTRPITRRSVSKLKKPISRSLRSSSRNATTKPEPQNNTKSNTSKDKAMVKRKREQNTAKVPPQKNNSTKQKVQKNKTDSMESDEETLGMLLDKLKRKKESKEPEAPTPRTDRKKTEEKNENVPPTEVVNNKLDSSKISDDEESFRGFSKKAISKVLNSCHTHVSANLLASEEADGKMDVLKTQDTPQTSNSDSREKKYTIIENDSLAPVITIPSYPFVKPVQELTINLDHKTVTNLQIPIVTKLDRKCNHDSNDTTVNIIDMPLPASLARKERVNMSTEQIEKWLNESSMAKEESKVEMETVSNFKYDIGEKVKADITHLSIPTRIQHLVRPVNVTLSKLAEKANSKDRIALQSRIIPTLITATQSIPLKLQNIPTNRNKINADIKEIIKGRNMKTSKDSSLGDDSDAVSKSDQNSVDGSPEKRSSPEKKSIFQPRKPFLPKVKERKGITPNANAFSPENESSVYAFESDTETPISTPFRRKLKEGNKANSVCSTTEDELMKAVEEVVKPNEESLKTEDEASRVNDVIVKTENEPQIIKNPIAPATISVNKFQLPKNFASLANVQVLPLDKLTTSWSNVNCSASIAVQVNLDEQSQDPQLVVSEENDQQKSTEISTQTESNNDNDDDNDGQLFYIPLQAVTRNGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPVSVARCPPVGTVQPTTRAPPTLSAQTTVEQPIASTSVVSTPSTSTFQQPPSIVQISTRQTTSNLQSSSRQATTVAATATTTTTTTTVTSSESKVTKSPKMTRERKASVDSVKNGKRSQSKTKHKISEFCSPTNDTTFPIALESSKEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSQEEREKLFDEVETEWTKHESKALMRQDAQSNDNDEEEEDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGSEAEGASADEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKNKTIWLPSDTAMVPPEMLVKNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFKDIQDSCEPTIFSFERLLFSIINDSRSHIDVLKQILPSVIKIRDREIDYRKQLEYLGLIDTERLPLPDSGKRKKGKKVNDDDGDFECETCRANLFVSLVNNSQDDSVYCLPHALHLLIRKKQVLKHCTLMYTYSEDELDDLIHKLEDRIEAKSKKTNQIRQAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298087; iTF_00251848; iTF_01474465; iTF_01473698; iTF_00253347; iTF_00294248; iTF_00291315; iTF_00293498; iTF_00296552; iTF_00292073; iTF_00295787; iTF_00770155; iTF_01198449; iTF_01199187; iTF_00297326; iTF_00254863; iTF_00252597; iTF_00295023; iTF_00292722; iTF_00254099; iTF_01394909; iTF_01475230; iTF_01472960;
- 90% Identity
- iTF_00298087; iTF_00251848; iTF_01474465; iTF_00253347; iTF_00294248; iTF_01394909; iTF_01472960; iTF_01473698; iTF_01475230; iTF_00296552; iTF_00770155; iTF_01198449; iTF_01199187; iTF_00297326; iTF_00291315; iTF_00293498; iTF_00295023; iTF_00292073; iTF_00295787; iTF_00254099; iTF_00254863; iTF_00252597;
- 80% Identity
- -