Basic Information

Gene Symbol
JARID2_1
Assembly
GCA_030142555.1
Location
JARQTF010000081.1:39329-46107[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.3e-23 1.7e-19 70.0 0.0 6 89 1353 1434 1349 1434 0.94

Sequence Information

Coding Sequence
atgGTATTGAGTCGAAAtgacaagagaaaaaggaaagaaggagaCCTTGTGGATCTCATGGATCCACTATCAGAATCACCTAATAGAACAAAGGTTCACGCGCAAAGAAAATTTGCACAAGGAGCTGCAACAGTTTTTAATCCTGCACACACTcccattaaagaaaaagagaaggtgAAGCCCGCTGTGATCACAGAATTAATCACACATAAACGCCCAAACACTGAAGACTTCCTTACATTTCTTTGCTTTCGAGgaACACGAATATTACCACCGAGTCTCAATTTCTTCAACGTTGGACACAAGAAAGGTTCTCCAAATCCAGAACGAGAACAAGCATCAACTGATAATAGTCCGTCGTCATCAGCGATGTCGACACCATCGATCGAAGTGCCAAAAGTGACAACATGTCAAAAATCTCCaggtaaaataaagaacagcataactgaaaagaaaaaggtaccaaacggaatacaaaaaaatattaacaaatacAAGGCAACGTCATCCACAGTTCAAGcattgaagaaaaagtatcaGGAACAGCGTCTTGCTAAACaaaggataaagaataaatttaaagcCTCATGTGTCATGAGAACGCGCTCAGCGACTGAGCAAGCAATTTTAAAATCTAGCAGTAAACTAGTACCAAGAAAATTCCTCCCTAAGGTCGAGACAACAAAAAGACACGGTTTACGAAGCAGCGCACTTGCGGATAAAACAAAGCGCGCGAATTTAACAAAAGTTAAACCGGCACCATCGAAaccaaagaaaaggaatattacAAAGGATAAAAGTAGTGATTCTTCAGATACGGAATCGTCGTCGGAAGAAGATGTGCCTCTTGTGAAACCAACGCCGCAAATAAAGCGCCCTCTGAAGTCGACAATTCCCAAAAAGATCTGCACCAGGAGTAAATCGGAAATGCGAAGAATAACGAGATCGCATAGCGAAACTATTTCAGCACAAACTCTATCCAGGCGACCATctaggaaaacaaaagaagctGCTGCCGTTTACATGGAAATTCTTGGAAGAAAGTTAATTAGTCCCGATTTAGAGAATGATGATAATCTATCGGTGGATAGTTTTCCCGAATTACCAAATGCTCGTAGAATCGCTCAAACGGAGAACGAGATCAGGGCGAAAGTAAAGCAAACGACAAAGCTCAGcacaaataaagaaagcaagagCGACGCTTCTACTAACAATGTCAAACGtgctgataaaaataaaccagACAGAGTCGTAACGAAGAGCAAAAGGCTGATGAGAGTACAAAAGTATTGCGAGTTAGATAGCGAGGAAGAATCGGAAAGTTCCATTGAATCTAATCAAACACGACCTATTACCAGACGAAGTGTTAGTAAACTGAAGAAACCAATTTCCAGGAGCCTGAGATCTTCCTCGCGAAATGCTGTGACGAAACCTGAGcctcaaaataatacaaaaagcAATACAGGCAAAGACAAAGCCATGGTGAAACGTAAACGAGAACAAAATACTGCCAAAGTGCCACcttcaaaaaataattcaacgaaGCAAAAAGTGCAAACGAACAAAAGCGATAGTGTGGAGTCCGATGAAGAAACATTAGGAATGCTATTGGATAaactgaaaaggaaaaaagaatctaaGGAATTGGAAACGCAGACTCCCCGTACAGACCGGAagaaaacagaagagaaaaatgaaaatgtaccTCCAACGGAAGTAGTAAACAATAAGCTTGACTCTTCTAAGATATCCGACGATGAGGAGTCCTTCagaggattttcgaaaaaggcAATTTCAAAAGTCCTTAATTCCTGCCATACTCACGTCAGTGCCAATCTTCTTGCATCCGAAGAAGCTGATGGGAAAATGGATGTGCTTAAAACACAAGACACGCCCCAAACCAGCAACTCGGATTcgagggaaaagaaatatacgattATAGAAAATGATAGTTTAACACCAGTTATAACAATACCAAGTTATCCCTTCGTTAAACCTGTACAAGAATTAACTATTAATTTGGATCACAAAACAGTAACCAATTTGCAAATACCAATGGTGACAAAGTTAGATAGAAAATGTAATCATGACTCGAATGATACTACAGTTAAGATCATCGATATGCCATTACCAGCATCTCTGGCACGTAAAGAACGTGTTAATATGTCAACAGAACGAATTGAAAAGTGGCTCAACGAAAGTTCAATGgctaaagaagaaagtaaagtcGAAATGGAAACAGTGTCCAACTTCAAATACGACATTGGTGATAAAGTCAAGACAACAGACATAACGCATTTATCAATACCCACTAGAATTCAGCATTTAGTACGTCCCGTTAATGTCACGTTATCAAAGTTAGCTGAAAAAGCAAACTCAAAGGATCGTATAACATTACATAGTAGAATTATACCAACGCTTATAACAGCTACTCAATCTATTCCATTAAAACTGCAAAACATACCAGctaacagaaataaaattaatgctgACATTAAGGAAATTATTAAAGGACGTAATATGAAAACTAGTAAGGATTCTTCTCTAGGGGACGATAGCGATGCTGTGTCAAAGTCCGATCAGAATTCAGTGGACGGTTCACCCGAGAAAAGATCATCTCCAGAGAAGAAATCAATGTTTCAACCACGCAAACCCTTCCTGCCAAAGGTCAAGGAGCGCAAGGGTATAACCCCAAATGCTAATGCATTTTCCCCAGAGAACGAAAGTAGTGTTTATGCTTTTGAGAGTGATACAGAAACTCCCATAAGTACGCCATTCCGGCGAAAACTTAAGGAAGGTAATAAGGCAAACTCTGTTTGCTCAACTACGGAGGATGAATTGATGAAAGCTGTGGAGGAAGTGGTGAAACCCAAcgaagaatcattaaaaactgAGGACGAAGCATCGAGagtcaatgattttatagTTAAAACTGAGAGCGAGCCACAAGACATAAAAACTCCTTTAGCTCCAGCTACTATTAGCGTTAATAAGTTTCATCTACCGAAGAACTTTGCCAGCTTAGCTAATGTTCAAGTTTTACCATTAGATAAACTTACAACCAGTTGGAGCAATGTTAACTGTAGTGCTTCTATAGCAGTACAGGTTAACCTTGATGAACAGTCCCAGGATCCACAATTGGTAGTGAGTGAGGAGAATGGTCAACAAAAGAGCACCGAGATATCCACCCAGACGGAGagtaataatgacaatgatgatgataatgatggaCAATTGTTCTACATTCCATTACAAGCAGTGACGAGGAATGGACCAAATTTAGTTCAAGGTCAACAATTGATACAAGGGGTTGCTGTTAAATTAGGGACCGAAGGTCCAACTGGACCCAATCAAAGAGTACTATTACGTGCTAAATTGGTTACCAAACCACCTGTGTCTGTTGCACGATGTCCTCCAGTTGGTACGGTACAACCTACAACTCGTACACCACCAACTCCTTCGGCACAGACAACTGTGGAACAACCAATCGCATCAACTTCTGTTCTATCCACACCGTCAACTTCTGCTTTTCAACAACCACCGTCTATAGTGCAAATTTCAACTAGACAAACTACTTCTAATCTACAAAGTTCTAATAAACAGGCAACTActgcagcagcaacagcaacaacaacaacgacaaCTACGGTAACGTCCTCCGAGTCGAAAGTCACGAAATCTCCAAAAATGaccagagaaagaaaagcttcTATCGATTCagtgaaaaatggaaaaagGTCACAGTCGAAAACCAAGCATAAAATCTCAGAATTCTGCTCACCCACTAACGACACAACATTTCCAGTTGCGCTGGAGTCAAATAAAGAAGCTCGACTTGTCGAAGCTCCAACTTTTCATCCAactgaaaaagattttcaggATCCATTGGAATACATTGATAAGATACGACCGATCGCTGAAAAATTTGGTATTTGCCGCGTGGTACCTCCGCCTAACTTTAAgCCGGAATGCAAGGTATCCGATGACATGCGATTTACAGCATACAATCAATACGTGCATCGTATGCTCCACAGATGGGGAccaaatgtaaaagaaatgatggctataaagaaatatttggctACCCAAAGCATAACGTTAACCCATCCGCCATGGatcgGTGGCATGGAAGTAGATCTGCCACACTTATATCAGACGGTACAGAGTTTAGGTGGACTGAAGGAAGttattgagaagaaaaaatggcagaaGGTTGCCGACGGTATGAAAATACCAAAATCTGCACAAGATCGTGTAACCAAATTAGATGACATCTATTGTAAATACTTATTACCCTACGACACATTATCACAGGaggaaagagaaaaattattcgatgaAGTAGAAACAGAATGGACGAAACACGAGAGCAAAGCATTAATGAGACAAAATGCTCAGTCCAATGATAAcgacgaggaggaagaggacgaCAGCTCTGACGAAATCGAAGAATGTATTGTAAAAGGTAGAAACATGCCGCTCAACGCTTTTTACCGAATTGCACGCAACACGCAACGTATGTGGTTCGGTGAGAATCAGCGTTCCGGAAGTGAGGCAGAGGGTGCTTCGGCGGATGAGGTGGAGAACGCATTTTGGAAACACGTTGCCGAAAGGAAGCGTCACGTATGCGTCCACGCAGCCAGCATTGACTCCAGTGGCCGCGGTTTTGGATTCTCCGTTGCTAAGAACAGCCCCTTTGCCAGGCACCCTTGGAATCTTAAAGTGCTTACTAACAATGCTGGGTCGGTGCTCAGAGCTTTGGGACCACTAATGGGTGTGACTGTACCAACGCTTCACGTTGGCATGTTGTTCAGTGCCTGCTGTTGGTATCGGGATCCACATGGCTTACCTTGGATAGAATATTTGCATACAGGCGCTAAAAAGATTTGGTATGGTATACCTGACGAACACAATAATAACTTTAGGGAAGCATTGTCGAAGATGGTACCTAGGTACTGCAAGAATAAGACTATTTGGTTGCCATCCGATACTGCCATGGTACCGCCAGAAATGTTAGTCAGGAATGGCGTACCTCTCTGTCAGACAGTGCAGGAACCtggtcaatttattattgtatttcctAAAGCATTTACTTCGAGCATTTGTACTGGTTATGTCGTCTCAGAGAGTGTGTATTTCGCGCAGTCTTCTTGGCTGGAAACTGCTGAACAAGTATTCAAGgACATACAAGATAGTTGTGAGCCAACAATATTCTCTTTCGAAAGACTACTGTTCAGTATTATCAATGATTCTAGATCTCATATCGACGTACTTAAACAGaTTTTACCGAGCGTTATAAAGATTCGTGATCGAGAAATTGAATATCGTAAGCAATTAGAATACTTGGGTCTGAATAATACTGAGAAGCTACCACTGCCCGATAgtggaaaacgaaaaaaggggaaaaaggTGAATGATGACGATGGTGATTTTGAATGTGAAACGTGTCGAACCAACTTGTTTGTTTCCTTGGTGAACAATTCGCAGGATGACAGTGTATACTGTCTTCCGCATGCCCTTCATTTGCTTATCAGAAAGAAACAGGTTCTCAAGCATTGCACACTTATGTACACCTACAGTGAGGATGAACTGGACGATCTGATTCACAAACTGGAAGATAGGATCGAAGCCAAATCTAAGAAGACTAATCAAATCAGACaagctaaataa
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLSESPNRTKVHAQRKFAQGAATVFNPAHTPIKEKEKVKPAVITELITHKRPNTEDFLTFLCFRGTRILPPSLNFFNVGHKKGSPNPEREQASTDNSPSSSAMSTPSIEVPKVTTCQKSPGKIKNSITEKKKVPNGIQKNINKYKATSSTVQALKKKYQEQRLAKQRIKNKFKASCVMRTRSATEQAILKSSSKLVPRKFLPKVETTKRHGLRSSALADKTKRANLTKVKPAPSKPKKRNITKDKSSDSSDTESSSEEDVPLVKPTPQIKRPLKSTIPKKICTRSKSEMRRITRSHSETISAQTLSRRPSRKTKEAAAVYMEILGRKLISPDLENDDNLSVDSFPELPNARRIAQTENEIRAKVKQTTKLSTNKESKSDASTNNVKRADKNKPDRVVTKSKRLMRVQKYCELDSEEESESSIESNQTRPITRRSVSKLKKPISRSLRSSSRNAVTKPEPQNNTKSNTGKDKAMVKRKREQNTAKVPPSKNNSTKQKVQTNKSDSVESDEETLGMLLDKLKRKKESKELETQTPRTDRKKTEEKNENVPPTEVVNNKLDSSKISDDEESFRGFSKKAISKVLNSCHTHVSANLLASEEADGKMDVLKTQDTPQTSNSDSREKKYTIIENDSLTPVITIPSYPFVKPVQELTINLDHKTVTNLQIPMVTKLDRKCNHDSNDTTVKIIDMPLPASLARKERVNMSTERIEKWLNESSMAKEESKVEMETVSNFKYDIGDKVKTTDITHLSIPTRIQHLVRPVNVTLSKLAEKANSKDRITLHSRIIPTLITATQSIPLKLQNIPANRNKINADIKEIIKGRNMKTSKDSSLGDDSDAVSKSDQNSVDGSPEKRSSPEKKSMFQPRKPFLPKVKERKGITPNANAFSPENESSVYAFESDTETPISTPFRRKLKEGNKANSVCSTTEDELMKAVEEVVKPNEESLKTEDEASRVNDFIVKTESEPQDIKTPLAPATISVNKFHLPKNFASLANVQVLPLDKLTTSWSNVNCSASIAVQVNLDEQSQDPQLVVSEENGQQKSTEISTQTESNNDNDDDNDGQLFYIPLQAVTRNGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPVSVARCPPVGTVQPTTRTPPTPSAQTTVEQPIASTSVLSTPSTSAFQQPPSIVQISTRQTTSNLQSSNKQATTAAATATTTTTTTVTSSESKVTKSPKMTRERKASIDSVKNGKRSQSKTKHKISEFCSPTNDTTFPVALESNKEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSQEEREKLFDEVETEWTKHESKALMRQNAQSNDNDEEEEDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGSEAEGASADEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKNKTIWLPSDTAMVPPEMLVRNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFKDIQDSCEPTIFSFERLLFSIINDSRSHIDVLKQILPSVIKIRDREIEYRKQLEYLGLNNTEKLPLPDSGKRKKGKKVNDDDGDFECETCRTNLFVSLVNNSQDDSVYCLPHALHLLIRKKQVLKHCTLMYTYSEDELDDLIHKLEDRIEAKSKKTNQIRQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01130593;
90% Identity
iTF_01130593;
80% Identity
-