Pkot018270.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_018246255.1
- Location
- DWLS01015467.1:1-5705[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-48 1.2e-44 153.6 10.8 90 268 1 191 1 210 0.87 2 3 3 3e+04 -6.1 18.1 1 48 211 257 211 275 0.73 3 3 1.6 1.6e+04 -4.5 8.7 134 166 248 280 239 290 0.40
Sequence Information
- Coding Sequence
- CACGAGCTGAAAGAAGTGGAGGAGAAGTTTCGAAAGGCGATGATCCTAAATGCTCAGCTTGATAACGACAAAGCGGCGCTCGGTTACCAGTTGGAACTGCTGAAGGACAGGATAGAGGAACTGCACGAGGAACACGCGCAGCTGCAGCGTGAACACAAGGAGAAGTGTTCAGCCCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGCCGCGGCGAGGGACGCGGTGCGAGCTCGGGACTCCGCCGCGGCCGCAGCGGGCTTCGCCTTCGTCGAGGCCGAACTCAGCACGGCGACGGGGGAGTTGGGACAGCAGGGCGAAGCGGCCGCGGTCGCGCAGGGCTTCGGCAAAGTGCCTCCGCTCGCGCTCGTCTCTCACCACTCGGAGCAGCTGCTCAACGACGCAGGCGAGGGCACTCTGGACGTGCGGTTGCAGCGGCTGGTGAGCTCTAAGCAGGCACTGGAGTCGGAGGTGAGGAAGCTGAAGCTATGTCTCAACGAGGAACGAGCCGCGCGGCAGAACGGTGTCGCGTCCCATCACGACAGAGAGCACGACAGCGAGCTGGAATCTCTGCGAAAATCTGTGGCGGAGGCGAAGGGCAGGGCGGCGCGGGCGGAAGCGGAAGCGGCACTGCAAGCAGCCGCAGTTGCCCGGCTCGAGGCGCAAGTGGCCAGACTGCGCGCGCGCCAGGAACACCAGGACGAACACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGTTTGCAGAGGGAGGCCAGGGAAGCTCTCAACCGAGTGGAGGAGCTGGAGACGGAAAACAGTCACCTGACTAAGCGTCTTGACAAGCTGAAGAACGCCAAGTCGGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- HELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHKEKCSAHERLKREHASLEREVAAARDAVRARDSAAAAAGFAFVEAELSTATGELGQQGEAAAVAQGFGKVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVASHHDREHDSELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQEHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158977; iTF_00180508;
- 90% Identity
- iTF_00180508;
- 80% Identity
- -