Adix014155.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_018248015.1
- Location
- DWHX01004354.1:15469-18512[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-21 1.2e-16 62.5 4.8 139 268 1 146 1 165 0.84 2 3 2 5.7e+04 -6.7 19.4 1 48 166 212 166 233 0.69 3 3 0.052 1.5e+03 -0.2 1.3 213 238 220 244 209 245 0.61
Sequence Information
- Coding Sequence
- CGTGAACATAAGGAGAAGTGCTCTGCACACGAGCGTCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGCCGCGGCGAGGGACGCGGTGCGCGCGCGGGACtcggccgccgccgccgcgggcTTTGCGTTCGTCGAGGCGGAACTCAGCGCAGAGACGAGGGAGGGGGGCGCCGCGCGGGGGCAGGCGGACGAAGTGGCCGTCGTCGCGCAGGGCTTCGGCAGCGTTCCGCCGCTCGCGCTCGTCTCCCACCACTCAGAGCAGCTGCTCAATGACGCAGGCGAAGGCACGCTGGACGTGCGGTTGCAGCGGCTGGTGAGCTCCAAGCAAGCGCTCGAGTCTGAAGTGCGGAAGCTAAAACTCTGCCTCAACGAGGAACGCGCCACGCGGCAGAATGGTGTCGCGTCGCATCACGACAGAGAGCACGACAGCGAGCTGGAATCCCTGCGCAAATCGGTAGCAGAGGCGAAGGGACGGGCGGCGCGGGCAGAAGCGGAAGCGGCACTGCAAGCTGCTGCTGTTGCGCGACTCGAGGCGCAGGTGGCcaggctgcgcgcgcgccagGAGCACCAGGACGAACATGAGGAGCAGCTCAAGCAGGAGCGTCGTCGTTTGCAGAGAGAGgcAAGGGAAGCTCTCAACCGAGTGGAAGAGTTAGAGACGGAAAACAGTCACCTGACGAAGCGTCTGGACAAACTGAAGAACGCCAAGTCGGCACTCCTGAAGGAGCTGTGA
- Protein Sequence
- REHKEKCSAHERLKREHASLEREVAAARDAVRARDSAAAAAGFAFVEAELSAETREGGAARGQADEVAVVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERATRQNGVASHHDREHDSELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQEHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01130045;
- 90% Identity
- iTF_01130045;
- 80% Identity
- -