Pkot025201.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- Mblk-1_1
- Assembly
- GCA_018246255.1
- Location
- DWLS01027536.1:1-3063[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 2.6e-09 37.4 0.0 1 38 18 56 18 61 0.92 2 2 3.5e-19 8.1e-16 58.2 0.0 1 43 223 266 223 268 0.95
Sequence Information
- Coding Sequence
- TTAAAACGCACGGCGCTGGACAACATGGGCAACGCGACGCGACGGACGTACACCGACGACGAGCTGCAGTCCGCGCTGCGGGACATCCAGTCGGGGAGGCTCGGCACGCGACGAGCCGCCGCCATCTACAGGATACCCCGCTCCACGCTCAGGAACAAGATCAACAAGTGCGGCCTCGCCACCGACCCCGCCCACGACTCCGAGCCCGACAGCGATCCAGAAAGGGCCGACTCGCCACCATCCGTTATCCTCAAAATACCAACATTCCCACCACCGGAAGATAAAAGCCCGTCCCCGGCGACACCTGTTACTCCAATTACACCAATAATCCCACCACCACAACCGCCAATAAACCCGACCTCCCAGCTACTCCTGCCGTCTGTCTTCGCCGACCCTCCGTCTACTCAACATCTTTTTACGTCCTTAAGCGACGTCATAGCCAAAAGCATCAGCCAAAAGTTCCAGCAGCCCCTAGAAAGGCCGCCGCAGCCCGAACTTCCGTTCATGAGGGCTCCTGACAGGCACGTGTCAGTGATCAAAACACCGCCGGACAACCAGAGGAATTATCCGGCGCCCAGCAATTCCAGAGCGACCCCCAATAATAACGGACAGCCGGCTACCGGCGGGAAAGGGACGCGCCCCAAGCGAGGCAAATACAGGAACTACGATAGAGATAGCTTGGTAGAGGCGGTGAAAGCTGTGCAGAGAGGGGAGATGTCGGTGCACAGAGCGGGCTCCTATTACGGGGTGCCGCACTCAACGCTAGAGTATAAGGTGAAAGAGCGGCATTTGATGCGGCCCAGGAAGAGGGAGCCGAAGCCACAACAAGAAGCGAAGCCGCAACCGAAGCCGCCGCCGAAACCGGCCACAAAACCCTTTTCCAACGGGCTCAACGGGCCCGAATCTTACCCAACCGGGTACCCGTTCTGGGCCGGGGGTTTCGCACCACCACCGGCGCCGGACCTCTACGCCTCGCACATGATGAGGAGATTACGCGACGAAGCGCCGCCGGCGAACGGATCGTTCCTCGAAGGTATCATCAGATCAAGTTTAGAAAGGCCGTTGCTCCAGCGATTAACGGAGCCGAGAGCGCCGATGGCCACCGGCGAAGCTCCCAGTTTGCTGCGGCGACTAGCCGGGGAGCCGGAGGAGTCCCCGCCGGCGCGAAGACCGCGCATAGACAGCTCGGACAGGCAGCTGGCCGCGGAGATGCGCGAGGCCGTCCAGAGACTCAGAGCAGACAAAATGCGACCGCGCAACGCAACCCCGACACCAGACACTAAA
- Protein Sequence
- LKRTALDNMGNATRRTYTDDELQSALRDIQSGRLGTRRAAAIYRIPRSTLRNKINKCGLATDPAHDSEPDSDPERADSPPSVILKIPTFPPPEDKSPSPATPVTPITPIIPPPQPPINPTSQLLLPSVFADPPSTQHLFTSLSDVIAKSISQKFQQPLERPPQPELPFMRAPDRHVSVIKTPPDNQRNYPAPSNSRATPNNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQQEAKPQPKPPPKPATKPFSNGLNGPESYPTGYPFWAGGFAPPPAPDLYASHMMRRLRDEAPPANGSFLEGIIRSSLERPLLQRLTEPRAPMATGEAPSLLRRLAGEPEESPPARRPRIDSSDRQLAAEMREAVQRLRADKMRPRNATPTPDTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496481; iTF_01494982; iTF_00197297; iTF_01115634; iTF_01139539; iTF_01146131; iTF_01176122;
- 90% Identity
- iTF_01176122;
- 80% Identity
- -