Ochl007118.1
Basic Information
- Insect
- Ornithomya chloropus
- Gene Symbol
- -
- Assembly
- GCA_963971445.1
- Location
- OZ020530.1:20777428-20783202[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 9.4e-08 32.0 0.0 1 38 556 594 556 599 0.89 2 4 1.1e-13 2.9e-10 40.1 0.0 2 39 611 648 610 651 0.94 3 4 1.3e-17 3.5e-14 52.6 0.0 1 45 665 710 665 710 0.98 4 4 7.3e-20 1.9e-16 59.9 0.0 1 43 717 760 717 762 0.96
Sequence Information
- Coding Sequence
- ATGAAAGAAAAAACAGTTCGCTTGTATTGGCTAGAGGGCTTATTGCGTACCGCCgaacaattgaaaattaaagGTCTATGTGAAACGGCTGAGAATACCGATGATTTGAATGACGCAGCTACAGCTACTATAACTGTATCTGAGAATATCCAACAGGCCGTTGTTGGTAATATTACTAATGCTGCGGTGTTACAAGGGCAGCAGTCCCCGCCTATACCccatcaacatcatcaacagcaacatcagcaacaacaacaattagcTAATTCTGCTGTTCTTACCCATGCTGTAAGTCCTGCCAGTATACAACAATTTGCTACCAGTGGTGGCCAATTGGTGACCTCTACGCCGGTTACAtcgcaacaacagcaacagcaacaacagcaacaacaattaagtCGTAAATCACGTTTACGTAAACGTTCTAAATCACCTGacctacaacaacaattacaacagcaacaacaacaacaacaacatcaacatccGCAAACTATACTCATCCAAAGTCAGAATCAGTCTATTGTCAGTCTGCAGCAAACATCGTCCGGCAATTATATACCAGTGTCTGGGGTACAGACGATAACTACCAGTGGTGGGGTGCAGCAGACCACACAGGGCCATTTAATAACTGGGGACGATTCCGATTCTGATAAACCATCATTGCAGAAAATCTGTAAGACTGAGATCGCAGCCGCTTCGCCGGCCTCAACATCGTCCGCTTCAGCTTCCAATAATGCTGGCGGTGTAAATGCTGTGGCCACCTCAGGACCTGCGATTGTTACACAAATAGTTGTATCACGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGaATGGTGGCATTCTAGGAGTACCGATGGGTTTTCTGGAATTTGCTCCCGAGCCACCAGCCCCCTCCGCTACCCCAGTAAATGTTACTGAACATGTAGATTTATCTTGTAATCCCAACACTGACACCAGGGACCTATCAAATCCACCCGAACCACTTGATATTGACAATCACTTGGCCCAACATATGATACAACGACTCGATCAGTCACCCATGCACGCCATACACCATCAGACTGGCGATGAGTCCAACTCGAATCTAGTGCAGCATATCAAGAGTGAAGTGATTGAGGCgaaacagcaacagcaacaccaGCAAGCGGCTGCCGTAGCCGCTGCGGCTGCTGCTCATCATCAAGCTCAACAGCAGCATTTGCATGCACAACAGTTGGCAGCGGCGCAAAATCAAAGCcaccaacagcagcaacagcaagtgcaacagcaacaagcaCACCAGCAGCATCAGCAATCAACGGCTGCGATAGTGGCCGCccaccaacaacaccaacaacagcagcagcagcaacagcaacaaaccCACCAAGAGATAACTGGAGCCACCGTTATGGAAATCGATCCGAGCCAAATTAAACATGAGCCTGGTATGATTATAACACCGGAAATTGTTAATATGATGACCACCGGCCATATGGATATGTACAATTCTGATACTAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCGCACTACACCAACCTAGATcatcagcaacagcagcatggtggtggtggtggtggtggtggcgatATCAAAGGTCAGTTTAATGGTCCCAAAAATTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGaagaatcaaaatatgagtCTGACGAAGGCCTCAGTAACGTATGGCATCCCTTCGACCACGTTATGGCAACGAGCACATCGTATGGGTATTGAAACGCCTAAAAAGGAGGGCGGCACGAAATCCTGGAACGAAGATTCATTGAATAATGCTTTGGAGGCGTTACGCTCTGGTCAAATATCCGCAAATAAAGCGTCTAAAGCTTTTGGCATTCCCTCCTCCACCCTGTACAAGATAGCCAGACGGGAGGGTATACGTTTGGCGGCACCATTTAATGCCGCCCCCACCACTTGGACGCCCGAAGATTTGGAGCGCGCTTTAGAAGCTATCAGAGCTGGCCACACATCGGTACAAAAGGCGAGTGCTGAATTTGGCATACCAACAGGCACCCTTTATGGCCGTTGTAAGCGGGAAGGTATTGAATTGTCCCGTTCGAATCCTACACCCTGGTCAGAGGATGCCATGAATGAAGCCTTAAATTCAGTACGAGTTGGCCAGATGTCTATTAATCAAGCGGCTATTCATTATAATTTACCATACAGTTCCTTGTATGGTCGTTTCAAGCGTGGCAAATACGATGTTGCAAATACCAGCGGAACTTCTCTCAATAACACATCGGGCAATACATCAGCCAGTATTGAAATCATTGAACACAGTCAAGAAAATTCGTTGCATATGTTGCAGCAACAGTTCCAGTACAGTCCATCACCACATCAACAGCCGCACGGTAGCGGCAGCAGTGGTGGTGGCAATAGTACAccgcagcagcagcaacagcagcagagccaaaatcaaacaCCACAACATATCCAACAGCATGTGGTGCATATACAACAGCAGCATCACTCGGCACAGCACATTCAACAGCAAGAGGTGGTCGCATCAAGtagccaacaacaacagcacggCAGTACATCAGCAGGAGCCACACAACAACAGATCCAGCAAATTTATCATCATCATAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MKEKTVRLYWLEGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNITNAAVLQGQQSPPIPHQHHQQQHQQQQQLANSAVLTHAVSPASIQQFATSGGQLVTSTPVTSQQQQQQQQQQQLSRKSRLRKRSKSPDLQQQLQQQQQQQQHQHPQTILIQSQNQSIVSLQQTSSGNYIPVSGVQTITTSGGVQQTTQGHLITGDDSDSDKPSLQKICKTEIAAASPASTSSASASNNAGGVNAVATSGPAIVTQIVVSRDGKDKNMTSLGMGMNGGILGVPMGFLEFAPEPPAPSATPVNVTEHVDLSCNPNTDTRDLSNPPEPLDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIEAKQQQQHQQAAAVAAAAAAHHQAQQQHLHAQQLAAAQNQSHQQQQQQVQQQQAHQQHQQSTAAIVAAHQQHQQQQQQQQQQTHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDHQQQQHGGGGGGGGDIKGQFNGPKNWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSLNNTSGNTSASIEIIEHSQENSLHMLQQQFQYSPSPHQQPHGSGSSGGGNSTPQQQQQQQSQNQTPQHIQQHVVHIQQQHHSAQHIQQQEVVASSSQQQQHGSTSAGATQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384496; iTF_01114933; iTF_00749814; iTF_00749612;
- 90% Identity
- iTF_00384496;
- 80% Identity
- -