Ofri014083.2
Basic Information
- Insect
- Ornithomya fringillina
- Gene Symbol
- -
- Assembly
- GCA_963978525.1
- Location
- OZ021694.1:1843249-1856275[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 7.6e-08 32.0 0.0 1 38 551 589 551 594 0.89 2 4 1.1e-13 2.4e-10 40.1 0.0 2 39 606 643 605 646 0.94 3 4 1.3e-17 2.8e-14 52.6 0.0 1 45 660 705 660 705 0.98 4 4 6.7e-20 1.4e-16 60.0 0.0 1 43 712 755 712 757 0.96
Sequence Information
- Coding Sequence
- ATGCTTCAGGCTACTGTAAGGGAAGAGGGCTTATTGCGTACCGccgaacaattaaaaattaaaggtCTCTGTGAAACGGCTGAGAATACCGATGATTTGAATGACGCTGCTACAGCTACTATAACTGTATCTGAGAATATACAACAGGCCGTTGTTGGTAATATTACTAATGCTGCGGTGTTACAAGGTCAGCCGTCCCCGCCTATAcctcatcaacatcatcaacagcatcagcagcatcagcagcaacaacaacaattagctAATGCTGCTGTTCTTACTCATGCTGTAAGTCCTGCCAGTATACAACAATTTGCTACCAGTGGTGGCCAATTGGTGACCTCTACGCCGGTTAcatcgcaacaacaacaacaacaacaacagcagcaacaacaattaagtCGTAAATCACGTTTACGTAAACGTTCTAAATCACCTgacctacaacaacaattgcaacagcaacaacatcaacatccgCAAACTATACTCATCCAAAATCAGAATCAGTCTATTGTCAGTCTGCAGCAAACATCGTCCGGCAATTATATACCAGTGTCTGGGGTACAGACGATAACTACCAGTGGTGGGGTGCAGCAGACCACACAGGGCCATTTAATAACTGGGGACGATTCCGATTCTGATAAACCAACATTGCAGAAAATCTGTAAGACTGAGATCGCAGCCGCTTCGCCGGCCTCAACATCGTCCGCTTCAGCTTCCAATAATGCTGGCGGTGTAAATGCTGTGGCCACCTCAGGACCTGCGATTGTTACACAAATAGTAGTATCACGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGTGGCATTCTAGGAGTACCGATGGGTTTTCTGGAATTTGCTCCTGAGCCACCAGCCCCCTCCGCTACCCCAGTAAATGTTAATGAACATGTAGATTTATCTTGTAATCCCAACACTGACACCAGAGACCTATCAAATCCACCCGAACCACTTGATATTGACAATCACTTGGCCCAGCATATGATACAACGACTCGATCAGTCACCCATGCACGCCATACACCATCAGACTGGCGATGAATCCAACTCGAATCTAGTGCAGCATATCAAGAGTGAAGTGATTGAGGcgaaacagcaacaacaccagCAAGCAGCAGCGGTGGCCGCTGCGGCTGCTGCTCATCATCAAGCTCAACAGCAGCATTTGCATGCACAACAGTTGGCGGCGCAAAATCAAAGCcaccaacagcagcaacagcaagtgcaacaacaacaagcacacCAGCAGCATCAGCAATCAACGGCTGCGATAGTGGCCGCCCAccagcaacaccaacaacagcagcagcagcaacagcaacaaaccCACCAAGAGATAACTGGAGCCACCGTTATGGAAATCGATCCGAGCCAAATTAAACATGAGCCTGGTATGATTATAACACCGGAAATTGTTAATATGATGACCACCGGCCATATGGATATGTACAATTCTGATACTAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCGCACTACACCAACCTAGAtcatcagcaacagcagcatggtggtggtggtggtggtggtggcgatATCAAAGGTCAGTTTAATGGTCCCAAAAATTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTGACGAAGGCCTCGGTAACGTATGGCATCCCTTCGACCACTTTGTGGCAACGAGCACATCGCATGGGTATTGAAACGCCTAAAAAGGAGGGCGGTACGAAATCCTGGAATGAAGACTCATTGAATAATGCTTTGGAGGCGTTACGCTCTGGTCAAATATCCGCAAATAAAGCGTCTAAAGCTTTTGGCATACCCTCCTCCACCCTGTACAAGATAGCCAGACGGGAGGGTATACGTTTGGCGGCACCATTTAATGCCGCCCCCACCACTTGGACGCCCGAAGATTTGGAGCGTGCTTTAGAAGCTATCAGAGCTGGCCACACATCGGTACAAAAGGCGAGTGCTGAATTCGGCATACCAACAGGAACACTTTATGGCCGTTGTAAACGGGAAGGTATTGAATTGTCTCGCTCGAATCCTACACCCTGGTCAGAGGATGCCATGAATGAAGCCTTAAATTCAGTACGAGTTGGTCAGATGTCCATTAATCAAGCGgctatacattataatttacCGTACAGTTCTTTGTATGGTCGTTTTAAGCGTGGCAAATACGATGTTACAAACACCAGCGGAACTTCTCTCAATAACACATCGGGCAATACATCAGCCAGTATTGAAATCATTGAACACAGTCAAGAAAATTCGTTGCATATGTTGCAGCAACAGTTCCAGTACAGTCCATCACCACATCAACAGCCGCACGGTAGCGGCAGCAGTGGTGGTGGCAATAGTACAccgcagcagcagcaacagcagcagagCCAAAatcaaacacaacaacatatCCAACAGCATGTGGTGCATATACAACAGCAGCATCACTCGGCACAGCACATTCAACAGCAAGAGGTGGTCGCCTCAAGtagccaacaacaacagcacggCAGTACAGCAACAGCTGCCACACAACAACAGATCCAGCAAATCTATCATCATCATAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MLQATVREEGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNITNAAVLQGQPSPPIPHQHHQQHQQHQQQQQQLANAAVLTHAVSPASIQQFATSGGQLVTSTPVTSQQQQQQQQQQQQLSRKSRLRKRSKSPDLQQQLQQQQHQHPQTILIQNQNQSIVSLQQTSSGNYIPVSGVQTITTSGGVQQTTQGHLITGDDSDSDKPTLQKICKTEIAAASPASTSSASASNNAGGVNAVATSGPAIVTQIVVSRDGKDKNMTSLGMGMNGGILGVPMGFLEFAPEPPAPSATPVNVNEHVDLSCNPNTDTRDLSNPPEPLDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIEAKQQQHQQAAAVAAAAAAHHQAQQQHLHAQQLAAQNQSHQQQQQQVQQQQAHQQHQQSTAAIVAAHQQHQQQQQQQQQQTHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDHQQQQHGGGGGGGGDIKGQFNGPKNWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSLNNTSGNTSASIEIIEHSQENSLHMLQQQFQYSPSPHQQPHGSGSSGGGNSTPQQQQQQQSQNQTQQHIQQHVVHIQQQHHSAQHIQQQEVVASSSQQQQHGSTATAATQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114130;
- 90% Identity
- iTF_00384496;
- 80% Identity
- -