Gpal017789.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- lolal
- Assembly
- GCA_000688715.1
- Location
- Scaffold88:334222-471658[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-11 8.3e-08 31.9 0.0 1 38 632 670 632 675 0.89 2 4 9.2e-14 2.5e-10 40.0 0.1 2 39 687 724 686 727 0.94 3 4 7.7e-17 2.1e-13 49.8 0.0 1 45 741 786 741 786 0.97 4 4 1.1e-19 2.9e-16 59.0 0.0 1 45 793 838 793 838 0.97
Sequence Information
- Coding Sequence
- ATGGCTCAAAGAAGTCATCAGTATTTTAGTTTGCGCTGGAACAACTATCAAAACACCATGACTTCGGTGTTCCAGCAATTGCGTGAAGATTTATCATTTGTCGATGTAACGCTTTCCTGTGAACATGGTTCCCTGAAAGCCCACAAGGTTGTACTCTCCGCGTGCTCTTCATATTTTCAAAAATTATTGCTGGAAAATCCTTGTAAACATCCAACGATTATATTACCCGGCGATATTATATTTACAGATTTAAAAACAATTATTGATTTTGTTTATCGCGGTGAAATTGATGTCACCGAATCCGAACTACAGGGTCTCCTGCGTACCGCCGAACAATTAAAAATCAAAGGTCTTTGTGAGACGGCTGAGAATGCGGATGATTTAAACGACGCTGCCACTGCTACTATCACTGTCTCCGAGAATATACAACAAGCCGTGGTCGGCAATATTGTTAACGCCACTGTTGTACAAGGTCAACCCTCACCGCCCATACCCcaccaacatcaacagcagcagcagcagcaacagcagcagcagTTAGCCAATGCTGCTGTTCTCGCACACTCTGTAAGTCCCGCCAGTGCACAACAATTTGTTACCAGTGGTCAGTTAGTTACTTCAACGCCAGTCGTAACGCAGCAACAACAGCAATTAAGTCGTAAATCTCGTGTACGTAAACGTTCAAAATCGCCAGATTTGCAACAGTTACAGCAACAGCATCATCAGCAATCTCAACATCCGCAAGCAATTCTTATACAAAACCAGAATCAAGCTGCCATCGTTAGTTTGCAACAGACGTCGGCTGGAAATTATATACCGGTATCGGGTGTTCAAACGGTTCAAACCACTTCGGGTGGCGGGCCACCGCAACCTGGTACTACAATAGTAACGGCAGACGATTCGGACTCTGATAAACCGACTCTGCAGAAAATTTGTAAAACCGAAGAggcttcggcttcaccggcttcgacgtcatcagcttcggcCTCGAATAATGCAGCTGGCGTAACTGCAGTGGCTAGCTCAGGACCGGCGATTGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCATTTTAGGAGTACCGATGGGCTTTTTGGACTTCGCTCCTGAACCCCCAGCACCTTCAGCCACTCCTGTCACTGTTACTGAACACGTAGATCTGTCTTGTAACCCTAGTACAGACACAAGGGATCTATCGAACCCCTCAGAACCGTTAGATATCGATAATCATTTAGCTCAGCATATGATACAGCGGCTCGATCAATCACCCATGCATACCATACATCATCAGACCGGTGATGAGTCCAATTCGAATCTTGTGCAGCATATCAAAAGCGAGGTAATAGAAGCcaagcaacaacaggtgcaacaacagcaacaacagcagcagcaacaagctgccgctgccgctcatcatcaggcccagcaacagcatttacatgctcaacagctggcagccgcccaagggcaagctcatcaacaacaacaacaagttcatcagcagcaacaacagcaacagcaggctcatcagcaacatcagcagcaggctgcagctcatcagcatcatcaacagcaacagcaacagACCCACCAAGAAATTACAGGAGCCACGGTGATGGAAATTGATCCGAGCCAAATTAAACATGAACCCGGCATGATAATAACACCGGAAATTGTGAATATGATGACTACTGGGCATATGGACATGTACAATTCCGACACGAGCGATGATTCAATGATGATTGCTAATGGTTCACCCCACGATCAAAATGAACCCCATTACACGAATTTAGATCAACAACAGCATGGTGGCGAACTCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCTCTAAAGAATCAAAATATGAGTCTGACGAAGGCCTCCGTTACATACGGCATCCCCTCAACTACACTGTGGCAGCGTGCTCATCGTATGGGCATTGAAACGCCTAAAAAGGAGGGTGGTACAAAATCGTGGAATGAAGATTCATTGAATAATGCCTTGGACGCGTTGCGTTCCGGACAAATATCGGCTAATAAAGCGTCTAAGGCCTACGGTATACCTTCCTCGACTTTATATAAAATTGCTCGACGTGAAGGGATACGCTTAGCGGCACCATTCAATGCAGCACCCACCACTTGGACTCAAGATGATTTGGATCGCGCCCTGGCGGCTATACGGGCCGGTCATACATCGGTACAGAAGGCAAGTGCTGAGTTTGGTATACCAACAGGCACTTTATACGGCCGCTGTAAACGTGAAGGTATAGAGCTATCAAGGTCAAATCCTACACCTTGGTCCGAGGATGCTATGAATGAAGCCTTAAATTCAGTACGCGTGGGTCAAATGTCCATTAATCAAGCCGCTATAAATTATAATTTACCCTATAGTTCTCTGTATGGCCGATTTAAGCGAGGTAAATACGATGTCTCCAATGCCAGTGGCACATCACTGAATAACACCTCGGGCAATACATCAGCCAGCATTGAAATTATTGAACATAGTCAAGAGAATTCGCAACAGTTCCAGTATAGTCCATCGCCGCACCAATCGGGTCATGGTAGTAGTACACCGCAGCAGCAAACAGGCCAAACACCACAGCATATTCAACAGCATGTGGTGCATATACAGCAGCAACATCACCCTTCTCAACAGCAACATGGCCAGCACATTCAACAGGATGTTGTGGTTACGTCAAGCAGTCAGCAACAGCAAGTGCATCAACATGGCGGCAGTTCAACAGCGGCCGGACAACAGCAGCAACAGCAAATCCAACAGATCTATCATCATCATAGCACACCCGAAAGGAGTTGA
- Protein Sequence
- MAQRSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVQGQPSPPIPHQHQQQQQQQQQQQLANAAVLAHSVSPASAQQFVTSGQLVTSTPVVTQQQQQLSRKSRVRKRSKSPDLQQLQQQHHQQSQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVQTTSGGGPPQPGTTIVTADDSDSDKPTLQKICKTEEASASPASTSSASASNNAAGVTAVASSGPAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEAKQQQVQQQQQQQQQQAAAAAHHQAQQQHLHAQQLAAAQGQAHQQQQQVHQQQQQQQQAHQQHQQQAAAHQHHQQQQQQTHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQQHGGELKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALDALRSGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLDRALAAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAINYNLPYSSLYGRFKRGKYDVSNASGTSLNNTSGNTSASIEIIEHSQENSQQFQYSPSPHQSGHGSSTPQQQTGQTPQHIQQHVVHIQQQHHPSQQQHGQHIQQDVVVTSSSQQQQVHQHGGSSTAAGQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114130;
- 90% Identity
- iTF_00749814;
- 80% Identity
- iTF_00749814;