Cpal013492.2
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- -
- Assembly
- GCA_949710015.1
- Location
- OX453293.1:20684859-20689454[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 6.9e-08 32.0 0.0 1 38 549 587 549 592 0.89 2 4 1.1e-13 2.2e-10 40.1 0.0 2 39 604 641 603 644 0.94 3 4 1.3e-17 2.6e-14 52.6 0.0 1 45 658 703 658 703 0.98 4 4 6.7e-20 1.3e-16 60.0 0.0 1 43 710 753 710 755 0.96
Sequence Information
- Coding Sequence
- atgttaatagattccttttttccttttgGGACATCCCCTATCTCTTTACAGGGCTTATTGCGTACCGCcgaacaattaaaaattaaaggtCTCTGTGAAACGGCTGAGAATACCGATGATTTAAATGACGCTGCTACAGCTACTATAACTGTATCTGAGAATATACAACAGGCCGTTGTTGGTAATATTACAAATGCTGCGGTGTTACAAGGTCAGCCGTCCCCGCCTATAcctcatcaacatcatcaacagcaacaacaacaattagcTAATGCTGCTGTTCTTACCCATGCTGTAAGTCCTGCCAGTATACAACAATTTGCTACCAGTGGTGGCCAATTGGTGACCTCTACGCCAGTTACatcgcaacaacaacaacaacagcagcagcaacaacaattaagtCGTAAATCACGATTACGTAAACGTTCTAAATCACCTgacctacaacaacaattgcaacagcaacaacaacatcaacatccgCAAACTATACTCATCCAAAATCAGAATCAGTCTATTGTCAGTCTGCAGCAAACATCGTCCGGCAATTATATACCAGTGTCTGGGGTACAGACGATAACTACCAGTGGTGGGGTGCAGCAGACCACACAGGGCCATTTAATAACTGGGGACGATTCCGATTCTGATAAACCAACATTGCAGAAAATCTGTAAGACTGAGATCGCAGCCGCTTCGCCGGCCTCAACATCGTCCGCTTCAGCTTCCAATAATGCTGGCGGTGTAAATGCTGTGGCTACCTCAGGACCTGCGATTGTTACACAAATAGTAGTATCACGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGTGGCATTCTAGGAGTACCGATGGGTTTTCTGGAATTTGCTCCCGAGCCACCGGCCCCCTCCGCTACCCCAGTAAATGTTACTGAACATGTAGATTTATCTTGTAATCCCAACACTGACACCAGAGACCTATCAAATCCACCCGAACCACTTGATATTGACAATCACTTGGCCCAGCATATGATACAGCGACTCGATCAGTCACCCATGCACGCCATACACCATCAGACTGGCGATGAATCCAACTCGAATCTAGTGCAGCATATCAAGAGTGAAGTGATTGAGGcgaaacagcaacaacaccagCAAGCGGCAGCGGTGGCCGCTGCGGCTGCTGCTCATCATCAAGCTCAACAGCAGCATTTGCATGCACAACAGTTGGCGGCGCAAAGCcaccaacagcagcaacagcaagtgcaacaacaacaagcacaCCAGCAGCATCAGCAATCAACGGCTGCGATAGTGGCCGCCCACcagcaacaccaacaacagcagcagcagcaacagcaacaaaccCACCAAGAGATAACCGGAGCCACCGTTATGGAAATCGATCCGAGCCAAATTAAACATGAGCCTGGTATGATTATAACACCGGAAATTGTTAATATGATGACCACCGGCCATATGGATATGTACAATTCTGATACTAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCGCACTACACCAACCTAGATcatcagcaacagcagcatggtggtggtggtggtggcgatATCAAAGGTCAGTTTAATGGTCCCAAAAATTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTGACGAAGGCCTCGGTAACGTATGGCATCCCTTCGACCACTTTGTGGCAACGAGCACATCGTATGGGTATTGAAACGCCTAAAAAGGAGGGCGGTACGAAATCCTGGAATGAAGATTCATTGAATAATGCTTTGGAGGCGTTACGCTCTGGTCAAATATCCGCAAATAAAGCATCTAAAGCTTTTGGCATACCCTCCTCCACCCTGTACAAAATAGCCAGACGGGAGGGTATACGTTTGGCGGCACCATTTAATGCCGCCCCCACCACTTGGACGCCCGAAGATTTGGAGCGTGCTTTAGAAGCTATCAGAGCTGGCCACACATCGGTACAAAAGGCGAGTGCTGAATTCGGCATACCAACAGGAACACTTTATGGCCGTTGTAAACGGGAAGGTATTGAATTGTCCCGTTCGAATCCTACACCCTGGTCAGAGGATGCCATGAATGAAGCCTTAAATTCAGTACGAGTTGGTCAGATGTCCATTAATCAAGCGGCTATACATTATAATTTACCGTATAGTTCTTTGTATGGTCGTTTTAAGCGTGGCAAATACGATGTTACAAACACCAGCGGAACTTCTCTCAATAACACATCGGGCAATACATCAGCCAGTATTGAAATCATTGAACACAGTCAAGAAAATTCGtTGCATATGTTGCAGCAACAGTTCCAGTACAGTCCATCACCACATCAACAGCCGCACGGTAGCGGCAGTAGTGGTGGTGGCAATAGTACAccgcagcagcagcaacagcagcagagCCAAAATCAAACACCACAACATATCCAACAGCATGTGGTGCATATACAACAGCAGCATCACTCGGCACAGCACATTCAACAGCAAGAGGTGGTCGCCTCAAGtagccaacaacaacagcacggCAGTACAGCAGCTGCCACACAACAACAGATCCAGCAAATCTATCATCATCATAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MLIDSFFPFGTSPISLQGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNITNAAVLQGQPSPPIPHQHHQQQQQQLANAAVLTHAVSPASIQQFATSGGQLVTSTPVTSQQQQQQQQQQQLSRKSRLRKRSKSPDLQQQLQQQQQHQHPQTILIQNQNQSIVSLQQTSSGNYIPVSGVQTITTSGGVQQTTQGHLITGDDSDSDKPTLQKICKTEIAAASPASTSSASASNNAGGVNAVATSGPAIVTQIVVSRDGKDKNMTSLGMGMNGGILGVPMGFLEFAPEPPAPSATPVNVTEHVDLSCNPNTDTRDLSNPPEPLDIDNHLAQHMIQRLDQSPMHAIHHQTGDESNSNLVQHIKSEVIEAKQQQHQQAAAVAAAAAAHHQAQQQHLHAQQLAAQSHQQQQQQVQQQQAHQQHQQSTAAIVAAHQQHQQQQQQQQQQTHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDHQQQQHGGGGGGDIKGQFNGPKNWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSLNNTSGNTSASIEIIEHSQENSLHMLQQQFQYSPSPHQQPHGSGSSGGGNSTPQQQQQQQSQNQTPQHIQQHVVHIQQQHHSAQHIQQQEVVASSSQQQQHGSTAAATQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01114130;
- 90% Identity
- iTF_01114933; iTF_01114130;
- 80% Identity
- -