Ocos011292.2
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- lola
- Assembly
- GCA_951751655.1
- Location
- OX632360.1:6498876-6503601[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5 1.2e+04 -3.3 0.1 4 20 102 118 101 119 0.73 2 2 2.2e-08 3.4e-05 24.0 0.1 9 40 424 456 423 461 0.88
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTAAGGTGGAACAATCATCAGAGTACGCTCATCCAAAACTTCGACACACTCCTAGAGAGCGGCACGTTGGTCGACTGCACCCTGGCAGCGGAGGGGAAGTACCTAAAGGCCCACAAAGTAGTCCTCTCCGCGTGCAGTCCGTACTTTGAGGGCCTTCTCAGCGAACACTATGACAAGCACCCTGTCTTTATATTAAAGGACGTTAAGTTTAAAGAACTGAAAGCCATGATGGACTACATGTACAGGGGAGAAGTGAATATCTCCCAGGACCAATTGGCAGCCCTCCTCAAAGCGGCCGAGTCGTTGCAAATAAAAGGCCTCTCGGAGAGCAAAACGGGGAGCAACAATAACGGCAGCAAAACGGactcatcctcgtcgtcgtcgaggCAACAACAGAAAGTGGTTGCGGCGCAGCCTACGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAATAAAGTTCCTAGGCAGAGTCTGGCACAGAGCTCGGTCGGCGATCTACCAGAAGACTCGGCAAGTCCTCAACTACCCAAGGGGCTATCCTCCAGGGAAGGCTCGCAAAGTCCGACatcgagaaagagaaagagattcaGAAGAAGAAGCGTCGGGGACGACAACTCGATCGAGAATCACGACGCCTCGAACTCGAGCGATATGCCGCAACAAATGAGCGTACCCTCACTCGGTATCGCACCAGTTGCAGACGAAAAGACTCACACCGATCAGACCGATCCCCTCGGCAGATCCGCGCTTATGCAACAGCTGACCAAACCCGCCGAGGACATGTTACAATTACCACTCGAAAAACCTGAGCCTACCGAAAGCCTGATCGAGCCAAAGTCCGAGTACCTGGAGGATAACGAGGAGAGCGTCGAAGATCTGACGCTCGACGACGATATGAACGACCTCAATGAAATGGAACAAGACAACAACAGAGCCGGCCCGTCCCACGATCCCTCCCAACATCCCGGTGGGGGGTCGATCTCGCGGTATCGCGGCACGAGTTCCGGCGTAACGATTGCCGCCGTCGCCGGCACGGTTGCCCGCGTCGGCGGcgtcggcgacgacgacgacgcgcgATGGGCGTCCCATTTCCTCGATTATCGTAATAAAAAGTACACGAACACGAGACGTCCACGTCCGGACGTTGACGTAGGCGCGTTGCTCAAATCTCTCGCCAACAAGCAGGGACGAAAGTATAGCTTAGACTCGGTTAAAATGTCGCTGGAGGCGATATTGCTGCAGGGCGTTAGCACCACCCACGCATCCGAGATGTACGGTATCAACCGTTCGACCCTACAGTTTTATCTGAAAAAATTGAACGTCGTCAGACGAAGATGGAGACAACCCGCGACACTCGTGCCTCAAGGACAGTCCTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGSNNNGSKTDSSSSSSRQQQKVVAAQPTAPSLDIPHASSGLTIEKNNKVPRQSLAQSSVGDLPEDSASPQLPKGLSSREGSQSPTSRKRKRFRRRSVGDDNSIENHDASNSSDMPQQMSVPSLGIAPVADEKTHTDQTDPLGRSALMQQLTKPAEDMLQLPLEKPEPTESLIEPKSEYLEDNEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGSISRYRGTSSGVTIAAVAGTVARVGGVGDDDDARWASHFLDYRNKKYTNTRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILLQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPATLVPQGQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266562;
- 90% Identity
- iTF_01100721; iTF_01102178; iTF_01102920; iTF_01101978; iTF_01102718; iTF_01103668; iTF_01103475; iTF_00262582; iTF_00262760; iTF_00829623; iTF_00266562; iTF_00265829; iTF_00265607; iTF_00439598; iTF_01299383; iTF_01299101; iTF_00263611; iTF_00263374;
- 80% Identity
- iTF_01100721;