Rmeg026438.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- lola
- Assembly
- GCA_963989365.1
- Location
- OZ022423.1:9179586-9183862[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-08 2.1e-05 24.9 0.1 9 40 409 441 408 446 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTAAGGTGGAACAATCATCAGAGCACGCTCATACAAAACTTCGACACACTCCTAGAGAGCGGCACGTTGGTCGACTGCACCCTGGCAGCGGAGGGGAAGTATCTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCGTACTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCACCCTGTCTTTATATTAAAGGACGTTAAGTTTAAAGAACTGAAAGCCATGATGGACTACATGTACAGGGGAGAAGTAAATATCTCCCAAGACCAATTGGCAGCACTCCTAAAAGCCGCCGAGTCATTGCAAATAAAAGGTCTCTCGGAGAGTAAAACGGGCAGCAATAACGGCAGCAAACCAGACTCATCGAGGCAACAACAAAAAGTCGTAACACAGCCTACGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAATAAAGTTCCTAGACAGAGTATGGCACAGAGCTCCGTCGGTGACTTACCTGAAGACTCCGCAAGTCCCCAGCTACCTAAGGGACTCTCCTCCAGGGAAGGCTCGCAAAGTCCgacttcgagaaaaagaaaaaggttcAGAAGAAGAAGCGTCGGCGATGACAATTCAATCGAAAATCATGATGCGTCTAATTCGAGTGATATGCCACAACAAACGAGCGTACCTTTATTCGGTATTACTCCAATTGCTGATGAAAAGACTCACACCGATCAAACCGATCCTCTCGGCAGATCGGCGCTTATGCAACAGCTGACCAAACCCGCCGAAGAAACGTTACAATTACCACTCGAAAAACCTGAACCTACCGAAAGCTTGATCGAGCCAAAGTCCGAGTACCTGGAAGATAAAGAGGAGAGCGTCGAAGACTTGACGTTCGACGATGACATGAACGACCTCAATGAAATGGAACAAGACAACAACAGAGCCGGCCCGTCCCACGATCCCTCCCAGCATCCCGGTGGGGGGGCGATCTCGCGGTATCGCGGTACGAGATCCGGTAATACGATTGTCGCTGGTACCGTTGTTGGCGGTGATGATGCACGATGGGCATCTCATTTCCtcgattataataaaaaatcgtcaaaCACGAGACGTCCACGTCCGGACGTTGACGTAGGCGCGTTGCTCAAATCGTTGGCCAACAAGCAGGGACGCAAATATAGCTTAGACTCGGTTAAAATGTCACTGGAAGCGATATTGCAGCAGGGCGTTAGTACCACCCACGCATCCGAGATGTACGGTATTAATCGATCGACCCTTcagttttatttgaaaaaattgaacgtCGTCAGACGTCGCTGGAGGCAACCGGCGACGCTTGTGCCTCACAGACAGTCTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGSNNGSKPDSSRQQQKVVTQPTAPSLDIPHASSGLTIEKNNKVPRQSMAQSSVGDLPEDSASPQLPKGLSSREGSQSPTSRKRKRFRRRSVGDDNSIENHDASNSSDMPQQTSVPLFGITPIADEKTHTDQTDPLGRSALMQQLTKPAEETLQLPLEKPEPTESLIEPKSEYLEDKEESVEDLTFDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAISRYRGTRSGNTIVAGTVVGGDDARWASHFLDYNKKSSNTRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPATLVPHRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266562;
- 90% Identity
- iTF_01100510;
- 80% Identity
- iTF_01299383;