Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990137.1:10603489-10610907[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.62 54 5.1 0.5 3 23 113 133 111 133 0.95

2 17 0.022 1.9 9.6 0.1 2 23 137 159 136 159 0.94

3 17 0.25 21 6.3 1.8 2 23 387 409 386 409 0.95

4 17 0.019 1.6 9.9 0.1 1 20 417 436 417 437 0.96

5 17 0.00073 0.063 14.3 0.5 2 23 448 469 447 469 0.94

6 17 1.3 1.1e+02 4.1 0.6 1 23 485 508 485 508 0.85

7 17 4.1 3.5e+02 2.5 0.5 3 20 612 629 611 633 0.78

8 17 4.9 4.2e+02 2.3 1.6 1 23 638 661 638 661 0.91

9 17 4.6e-05 0.004 18.0 1.8 1 23 667 689 667 689 0.96

10 17 8.3e-06 0.00071 20.4 1.9 1 23 696 718 696 718 0.98

11 17 7.8e-05 0.0067 17.3 2.3 1 23 723 745 723 745 0.96

12 17 0.00033 0.028 15.4 1.5 1 23 751 773 751 773 0.98

13 17 1.6e-06 0.00014 22.6 1.4 1 23 779 801 779 801 0.98

14 17 0.00029 0.025 15.5 1.7 2 23 808 829 808 829 0.98

15 17 0.00033 0.029 15.4 0.8 2 23 837 859 836 859 0.97

16 17 7.2e-05 0.0062 17.4 0.2 1 23 864 886 864 886 0.98

17 17 0.0055 0.47 11.5 0.8 1 23 892 915 892 915 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.62	54	5.1	0.5	3	23	113	133	111	133	0.95
2	17	0.022	1.9	9.6	0.1	2	23	137	159	136	159	0.94
3	17	0.25	21	6.3	1.8	2	23	387	409	386	409	0.95
4	17	0.019	1.6	9.9	0.1	1	20	417	436	417	437	0.96
5	17	0.00073	0.063	14.3	0.5	2	23	448	469	447	469	0.94
6	17	1.3	1.1e+02	4.1	0.6	1	23	485	508	485	508	0.85
7	17	4.1	3.5e+02	2.5	0.5	3	20	612	629	611	633	0.78
8	17	4.9	4.2e+02	2.3	1.6	1	23	638	661	638	661	0.91
9	17	4.6e-05	0.004	18.0	1.8	1	23	667	689	667	689	0.96
10	17	8.3e-06	0.00071	20.4	1.9	1	23	696	718	696	718	0.98
11	17	7.8e-05	0.0067	17.3	2.3	1	23	723	745	723	745	0.96
12	17	0.00033	0.028	15.4	1.5	1	23	751	773	751	773	0.98
13	17	1.6e-06	0.00014	22.6	1.4	1	23	779	801	779	801	0.98
14	17	0.00029	0.025	15.5	1.7	2	23	808	829	808	829	0.98
15	17	0.00033	0.029	15.4	0.8	2	23	837	859	836	859	0.97
16	17	7.2e-05	0.0062	17.4	0.2	1	23	864	886	864	886	0.98
17	17	0.0055	0.47	11.5	0.8	1	23	892	915	892	915	0.97

Sequence Information

Coding Sequence: ATGGCGTCTGATGAATCAGACGATGAACCCTTGTCGTTATTGGCAGCAGCCAAGAAAAGCGATCCCTTGAAGTTTGAGTGTGAAATAATTCCAATAGAAGATAAGACTTCTAAAAAGCGAAATACTTCAACTAAGAACACAAGTTTAACGATTAAAATAAACCGGCGACTCAAAACAGTATCAGCGCCTCCTGTAATAGACAGACCTACTGATGTTTGGCTATATTTAAAAGATTTGAACCCAACTGGACCCTACAAATGCCTTCTTTGCGCAGACTGGTTTATAAATCGCTCTAAAATGGTAGTGCATTACGTTCTTAATCACAAAAAGGACTTTTGTGGCATCTGCAGGTATTTTGTTAATGATCGAGAAAGCTGGAAGTCACATGTCAAGTTTCATGAACCATGGCCGTGTTCTCAGTGTGTGGAAACATTTCCTTCAGAACTATCTCTCCGGCAGCACCTTAGTTCAGTGCACAAGCTTGTTCACTGCCGGCTATGTCACTTCAGATTACCAGTGGGTGAACAATATGATGCTCACTTAGGGCAGAAGCACAATGTCTCAAATGTCTACTGCAAGGATGAAGAATGCTTTTGGGAGATAGAAGACGAGCACTTGCCAAAGTTCAGCTGCTATCTGTGCACCAAGCAAAATAATTTATCATCCACGTTCTTCACTCACTACATGGGCTTTCATCACTTCACTCTGAAATGCATTACTTCCTTTATTTCTGGTACTGATCCACCATTCACTGTACACGGTGCTGAAATTAGCACTCAATTTGTTGACGGGCAACTGAAGGATTTGAATGCATTTGGTTATGTTGACATGGAGCAAAAGCCAGTTGGACTTCCAGTTCTGCTACAAAATAATCAAACTGACATTAATGATCCACCAAAACCAGTGACTGAAATAAAGAATGAATCACCCGAATGTGATGAGCCAAAACAAAACGAGAACTATTCAAATAAAGTGGAGAACCAAGCTGATGTAGACGCATATGAGGGAGATGATGACTTCGATGTAACTCTTACCGAACTGATTATACTTCAAAGATGTTACTTTGACTACATAAAAAAGATTTTGAATGATATCTCTCAGAACTTAGTCCCTGTAAACTCAGATATTAATAACAGAAATGATGTTGTTCTAAACGTCAAATGTCCTTTATGCGACAGTAAATTTCATACTGGCCAGTTGTTTATGAGCCACATGTACAAGATGCATAATGTTAAGTCCATTCCTAGTTACTCGTGTAGAGTATGTGGCACTAATTTTGATAGCCTCACAGAGCTGGATAGTCATATTGTGGATGAGATAAATAATTTTGAAAACTTGTGGATATGCCAGTTTTGTGATCAGGAATTTACTAACCGAGAGAATGTAAGGAAACATTTGAGTGACCATTGGGAGGCTATAGAGTACGACAACTGCTTCAGCCCTCACTTAGGGTTTCGTTGCAAGTATTGTCCAACATTGTTTTGGAACGAGACTGACCGGGAACAACACCAAGTTAGAGTACACTTCCATAAGTACACAGATCAATTTTACAAATGCAGTAGTTGCTCTGTGTGGTACATACACCATTACTTAGAAAATCATTTGAATGGAGAGAAAATGGGATCCTATCTGCTAAAATGCTGTGTGTGCTGTGTAGTTCTTTCTGGCATTGACGAAATGAGGACCCACTTCATTGACCAACACCCCGACGCAAGGAAGGTGTACTGTTCTCTAGACCCCTGTAAATACAAGCCTCTCAGTCAGCGAAAGTCTTTAAAACTGCATGTGAAGGCAGTGCACACGGTGCGCAACGGGCCGGAGAAGCCGGTGGCGTGTCCTGTGTGCACCCGGGAGTTCCCGTCGGTGCGCTCGTGCAACGCGCACGCCACGCAGGTGCACGGGCCCGGCAAGTTCAAGTGCAAGCTGTGCAAGGCCATGCTGCACACCCTGGATGAACGCAAGCTCCACTACCTGCTGATCCACCCGGGGCGGCACCCGTTCGAGTGCTCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAACAGGACCACCTGCCCAACAAGCAGAGCTACACCTGCAACTACTGCAACAAGGAGTTCGTGAAGAAGGACTCGTTCCGCGAGCACCTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGGCACACCGGCGAGCGCCCGTACGCGTGCCCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACGCCAGGACACATTCAAAGGAGTCCTCGTACGCCTGTCTGTACTGCGGGCAGACATTCGTGCAAAAGTCGAAGCTCACCTACCACATCAGAAAGCACACGGGTGAAAATCTGGAGACATGTTCGATCTGCTCGAAGCTGTTCACGAGCGCGTGCGCACTGCGCGAGCACATGAAGATCCATCTCTGCAAGAAGGAGTCCGTCAAGTGTCCGCTGTGTGACAAGAAGTATCAAGACGAGCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGCGCACGCAGTTCACGTGCCCCGTCTGCCAGAAGGTGGTCACCAGCGCCGTGGGGCTGCGCCACCACGTCATCACCCACAGCCCGCTGAACACCTTCCGCTGTAGAGTATGTCCGAAGTCGTATGCAGTGAAACGGACGATCGTGAAGCATTTACTCCGACGTCATTCGCTGAGCAGCTCCGAGGTGAATCTCAAGGACTACTACACTCGGCTGGAGCCGCGGCAATGCAAGCTGGATCTGGATGAGGAGACCATGACCAGAGTCTTCGGTCCACCCAAGAAGAGGCCCGAGATACTCATAACTGACTTTGTGACCTATACACGGGATAAGAACCAGAAGAAAGAGGTGAAAGAGACAAGCGAACAGTCGGAGAAGGACAGCGATAGCAACTCTGATAATGATAGTTCACAGAAAGAGACAGAACCGAAGATCAAACAGGAGAGCTCCGAGGATATGGACCAAGATGATGCAGGAAACGAGTTGGAACCAACAGATTTCGTCAGCGTTAAGATTGAACCTATAGAGGATGATGAAATGGCATAG
Protein Sequence: MASDESDDEPLSLLAAAKKSDPLKFECEIIPIEDKTSKKRNTSTKNTSLTIKINRRLKTVSAPPVIDRPTDVWLYLKDLNPTGPYKCLLCADWFINRSKMVVHYVLNHKKDFCGICRYFVNDRESWKSHVKFHEPWPCSQCVETFPSELSLRQHLSSVHKLVHCRLCHFRLPVGEQYDAHLGQKHNVSNVYCKDEECFWEIEDEHLPKFSCYLCTKQNNLSSTFFTHYMGFHHFTLKCITSFISGTDPPFTVHGAEISTQFVDGQLKDLNAFGYVDMEQKPVGLPVLLQNNQTDINDPPKPVTEIKNESPECDEPKQNENYSNKVENQADVDAYEGDDDFDVTLTELIILQRCYFDYIKKILNDISQNLVPVNSDINNRNDVVLNVKCPLCDSKFHTGQLFMSHMYKMHNVKSIPSYSCRVCGTNFDSLTELDSHIVDEINNFENLWICQFCDQEFTNRENVRKHLSDHWEAIEYDNCFSPHLGFRCKYCPTLFWNETDREQHQVRVHFHKYTDQFYKCSSCSVWYIHHYLENHLNGEKMGSYLLKCCVCCVVLSGIDEMRTHFIDQHPDARKVYCSLDPCKYKPLSQRKSLKLHVKAVHTVRNGPEKPVACPVCTREFPSVRSCNAHATQVHGPGKFKCKLCKAMLHTLDERKLHYLLIHPGRHPFECSECGKSFQYKSSLYMHKQDHLPNKQSYTCNYCNKEFVKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHARTHSKESSYACLYCGQTFVQKSKLTYHIRKHTGENLETCSICSKLFTSACALREHMKIHLCKKESVKCPLCDKKYQDERYMLRHLRTSHTRTQFTCPVCQKVVTSAVGLRHHVITHSPLNTFRCRVCPKSYAVKRTIVKHLLRRHSLSSSEVNLKDYYTRLEPRQCKLDLDEETMTRVFGPPKKRPEILITDFVTYTRDKNQKKEVKETSEQSEKDSDSNSDNDSSQKETEPKIKQESSEDMDQDDAGNELEPTDFVSVKIEPIEDDEMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00795906; iTF_00971587; iTF_00887635; iTF_00970643; iTF_00167086; iTF_01439256; iTF_01438256;
90% Identity: iTF_00887635;
80% Identity: -