Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989991.1:5428266-5433201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.37 34 5.8 6.5 1 23 244 267 244 267 0.95

2 12 0.073 6.7 8.0 0.6 1 23 275 297 275 297 0.92

3 12 0.0025 0.23 12.6 2.7 2 23 304 325 303 325 0.97

4 12 1e-05 0.00097 20.1 1.1 1 23 331 353 331 353 0.98

5 12 1.9e-06 0.00018 22.4 1.3 1 23 362 384 362 384 0.96

6 12 0.00098 0.09 13.9 0.3 3 23 390 411 389 411 0.93

7 12 0.00043 0.04 15.0 7.0 1 23 417 439 417 439 0.97

8 12 1.6e-09 1.5e-07 32.1 0.8 1 23 445 467 445 467 0.98

9 12 0.00018 0.017 16.2 3.5 1 23 473 495 473 495 0.99

10 12 0.00076 0.07 14.2 2.6 1 23 501 522 501 522 0.96

11 12 0.00058 0.053 14.6 0.2 1 23 528 550 528 550 0.96

12 12 6.3e-07 5.8e-05 23.9 2.2 1 23 556 578 556 578 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.37	34	5.8	6.5	1	23	244	267	244	267	0.95
2	12	0.073	6.7	8.0	0.6	1	23	275	297	275	297	0.92
3	12	0.0025	0.23	12.6	2.7	2	23	304	325	303	325	0.97
4	12	1e-05	0.00097	20.1	1.1	1	23	331	353	331	353	0.98
5	12	1.9e-06	0.00018	22.4	1.3	1	23	362	384	362	384	0.96
6	12	0.00098	0.09	13.9	0.3	3	23	390	411	389	411	0.93
7	12	0.00043	0.04	15.0	7.0	1	23	417	439	417	439	0.97
8	12	1.6e-09	1.5e-07	32.1	0.8	1	23	445	467	445	467	0.98
9	12	0.00018	0.017	16.2	3.5	1	23	473	495	473	495	0.99
10	12	0.00076	0.07	14.2	2.6	1	23	501	522	501	522	0.96
11	12	0.00058	0.053	14.6	0.2	1	23	528	550	528	550	0.96
12	12	6.3e-07	5.8e-05	23.9	2.2	1	23	556	578	556	578	0.99

Sequence Information

Coding Sequence: ATGGAGAAGAAAACCAATGAAAATACTAATGACTTAGAAAATGAAATACCGCTAACTGCAATAGTAAATAATAAACATATAGAACTAACTGAAACAGTCACAGCTAAAAATAGGTTTCAAAATGATTTTAAAACAAAACCTGAGTTATCTATAGATATGAAATATGTTTGTCGAATATGCCTAATGGCTGAAAATAATATGATTTCACTGATGACTACAGTTGGATGTGATTTGTTAGCTGATATATTCACTTCTATTTCTTCCATTAAAGTTTCTTCTGAAGAAAGCCTTCCATTACAAATATGTGCTCCATGTCAAGGTGATATCTTACATTGCTATAAATTCAAGCTAAAATGCAACAAGACAAACAACATTTTAAGGTCCTTATTAAAAGAAAAATGTAATAGTAACATAAATAGCTACGATACTAGCACTTCAGATAAGGTGGATCAGAAAACAGGGACAATGCTTAATGATGTTAGAAAAATAAACCAAATGCAACAAAATGAAATTAAAACTATAAAAGAAGAAACTTTTTTGAAAGAAGAGGAAGATGTAAAAAAAGAAATAAATGAGGACCATGAAGAAATTGAATATTTGGAGGATGACATATTTTATGATAATGATGCTGACAACAATGAAGGTGATATAAGAAGTGAGGAAAGTATTGAATTAGCAGATAGAGAAAAAAAGTTCAATCAAAAAAGCTTTAAAGCAAAAAAGAAACGATTTAATTGCAACAAATGCTTTAAGAATTTTCTAAAATCAAAAACACTGAGAACGCACATCCAGCAGTGTCATAGCAGCAAAACAATTACACCATTTGCTTGTGGACAGTGCAAAGATTCCTTTAATTCTCAAGAAGATCTCCACATACATTCGGCATTGCATGTCAAGGGTAATCACTGGACATGTAATCAATGTCTTAAGGACTTTACAGAACGCAACAGATTCAGACGTCACATCCGGCGTCACATGGAGACGAAGCGGTACCCGTGCGAGACGTGCGACAAGACGTTCTCGGAGCTGTGCGCTCTGCGGCGCCACGCGCGCGTGCACACCGGGGAGAAGGTCGAGAAGAAGTATCGCTGCGATATATGCGACAAAAGGTTCTGCGACAGCAGCCAGCTGGCAGCGCACTCGGCGCGCCACACGGGCGTGCGGCCGTGCGCGTGCGAGTGCGGGAAGGCCTTCCCCTCGCGCCGCCTGCTGGCCTCGCACCGCCTCGTGCACTCCGACCTCAAGCGCTTCGCGTGCGACTACTGCGACAAGCGATTCCGTCACGAGTCGACACGAAACACACACCACCGCACCCATACGGGAGAGAAGCCTTACATCTGCTCGATATGCGGCAAGACGTTCATACAGAGCTCCAACCTCAAGCTACATATGCGCACTCATACGGGTGAAAGGCCGTACACGTGTGATGTTTGTGGGCGAAAGTTTACTTCTGGCTCCTCACTGACGTGTCACCGTCGCACGCACACCGGGGAAAAACCATACAGCTGCCATATTTGCGGAAAAAGGTTTGCTAGGACAGACATTCGCACGCACATGCGCCAGCACACCGGCGAACGGCCTTTCGCCTGCTTCGTTTGCCCCAAGAAGTTTATCAATGCTGCACGACTACGTGACCACTATCTCATACATACGGGTGAAAAACCCTACGAATGTACTATTTGTAACGAAAAATTCAAAAAGAAAAGTTATTTAGCGAAACATCTCAGAAGCCACGGTAAAGAGAAAAAAGTTAAAGAGAAAAAGATTGTAATTGTCCAACAATTACCTTTCGTGATGGATAATAATTTAATTTATGCAGAAAATGGAACTAATGATACTGCTATAAAAGGAACCACTGAATCAAATGTTGATAGTGAATATGAGAACAAGGAAGTCACTTTGGTTACAGAGGAAGTTCCTTTGGAAGTATCCGGAGAGCTTGTATTACAAGATGACAGTAATGTGAAGGCTGACCTCGTAGTGGTCAATGTTGGACATAATAACCTAAATTACGAAGAGGGAGATATATGTTTAAATACAAACAATATCAATTTTGAAAATGATCCAAATACACATAATGGTAGTTTAGTGACTGTGAATGAAGGCGAGGTGAATATATCGGAGTCCACTTCGGTCTTAGAGGGAAGTGCAGTGAAATTATACCAGTTAGACCAAAGTTTAGTGCAAATACATACATCTGGCCGACATATCACAATCCAAAAAATTACTAGTAAAATTCGAACGAACTTCAATTAA
Protein Sequence: MEKKTNENTNDLENEIPLTAIVNNKHIELTETVTAKNRFQNDFKTKPELSIDMKYVCRICLMAENNMISLMTTVGCDLLADIFTSISSIKVSSEESLPLQICAPCQGDILHCYKFKLKCNKTNNILRSLLKEKCNSNINSYDTSTSDKVDQKTGTMLNDVRKINQMQQNEIKTIKEETFLKEEEDVKKEINEDHEEIEYLEDDIFYDNDADNNEGDIRSEESIELADREKKFNQKSFKAKKKRFNCNKCFKNFLKSKTLRTHIQQCHSSKTITPFACGQCKDSFNSQEDLHIHSALHVKGNHWTCNQCLKDFTERNRFRRHIRRHMETKRYPCETCDKTFSELCALRRHARVHTGEKVEKKYRCDICDKRFCDSSQLAAHSARHTGVRPCACECGKAFPSRRLLASHRLVHSDLKRFACDYCDKRFRHESTRNTHHRTHTGEKPYICSICGKTFIQSSNLKLHMRTHTGERPYTCDVCGRKFTSGSSLTCHRRTHTGEKPYSCHICGKRFARTDIRTHMRQHTGERPFACFVCPKKFINAARLRDHYLIHTGEKPYECTICNEKFKKKSYLAKHLRSHGKEKKVKEKKIVIVQQLPFVMDNNLIYAENGTNDTAIKGTTESNVDSEYENKEVTLVTEEVPLEVSGELVLQDDSNVKADLVVVNVGHNNLNYEEGDICLNTNNINFENDPNTHNGSLVTVNEGEVNISESTSVLEGSAVKLYQLDQSLVQIHTSGRHITIQKITSKIRTNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01507437; iTF_01508270; iTF_01506557; iTF_01080095;
90% Identity: -
80% Identity: -