Basic Information

Insect: Vanessa tameamea
Gene Symbol: -
Assembly: GCA_037043105.1
Location: CM073285.1:8700035-8705756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.29 21 6.3 5.2 1 23 242 265 242 265 0.97

2 12 0.4 29 5.8 0.8 3 23 275 295 273 295 0.92

3 12 0.0015 0.11 13.5 3.8 2 23 302 323 301 323 0.97

4 12 0.0015 0.11 13.4 2.5 1 23 329 351 329 351 0.95

5 12 2.1e-06 0.00015 22.4 1.3 1 23 360 382 360 382 0.96

6 12 0.00056 0.041 14.8 0.5 3 23 388 409 387 409 0.93

7 12 0.00048 0.035 15.0 7.0 1 23 415 437 415 437 0.97

8 12 1.8e-09 1.3e-07 32.1 0.8 1 23 443 465 443 465 0.98

9 12 0.0002 0.015 16.2 3.5 1 23 471 493 471 493 0.99

10 12 0.00084 0.062 14.2 2.6 1 23 499 520 499 520 0.96

11 12 0.00093 0.068 14.1 0.7 1 23 526 548 526 548 0.96

12 12 1.4e-06 0.0001 23.0 1.3 1 23 554 576 554 576 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.29	21	6.3	5.2	1	23	242	265	242	265	0.97
2	12	0.4	29	5.8	0.8	3	23	275	295	273	295	0.92
3	12	0.0015	0.11	13.5	3.8	2	23	302	323	301	323	0.97
4	12	0.0015	0.11	13.4	2.5	1	23	329	351	329	351	0.95
5	12	2.1e-06	0.00015	22.4	1.3	1	23	360	382	360	382	0.96
6	12	0.00056	0.041	14.8	0.5	3	23	388	409	387	409	0.93
7	12	0.00048	0.035	15.0	7.0	1	23	415	437	415	437	0.97
8	12	1.8e-09	1.3e-07	32.1	0.8	1	23	443	465	443	465	0.98
9	12	0.0002	0.015	16.2	3.5	1	23	471	493	471	493	0.99
10	12	0.00084	0.062	14.2	2.6	1	23	499	520	499	520	0.96
11	12	0.00093	0.068	14.1	0.7	1	23	526	548	526	548	0.96
12	12	1.4e-06	0.0001	23.0	1.3	1	23	554	576	554	576	0.99

Sequence Information

Coding Sequence: ATGTCGAACCAAAACAACGAAAATTCTAATGATTTAGAAAATGAAATACCACTAACTGCTATAGTATATAACAAACACATAGAACAAAGTAAAACAGTCAtgccaaaaaatatgtttcaaaatgAATCTACATCAAATCCAGGGATAtctatagatattaaatatgtttgtcGAATATGCCTAACGgctgaaaataatatgatttcacTGATGTCTACAGTTGGATGTGATGTCTTGGCTGATATGTTCACATCTATTTCTTCcattaaaGTTTCTTCCCATGAAAGCCTTCCGTTACAAATATGTGTTCCATGTCAAAGGGATATCTTACATTGCTATAAATTTAAGCTCAAATGTAACAAGACAAACAACATTTTGAGGTCCTTATTAAAGGACAAATGTAATAGTAACCTTATTGGCTACAATACTAGCGATTTAGATAAAGTGGATCAGATAACACAAACAATGTTTGATGACGTTGTAAGATTAAATCAAATGCAACAGAATGAAATTAATACTCTAAAAGATGAAACATTAAAAGAAGAGCAAGATCTTAAAACAGAAATTAATGAAGATCATGACGaaattGAATATTTAGAGGATGACATTTTTTATGACAATGATGTTAAAAATGAAGAGGATAAAAGAAGTGAAGAGACACTTGAATTAACAGataaagaaaaaaaatataatcaaaaaagttttaaagcaAAGAAGAAAAGATTTAATTGCAACAATTGTTTTaagAATTTCCTAAAATCTAAAACACTGAGAATACACGTCCAGACATGTCATAGTGGTAAAACATTCCCGCCATTTGGTTGTGGACAGTGCAAAGATTCCTTTAATTCTCAAGAAGATCTGCACATACATTCGGCACTGCACGTCAAGGGTACCCACTGGACATGCAATAAATGTTTCAAAGACTTTACAGAACGCAACAGATTCAGACGTCACATCCGGCGTCACATGGAGACGAAGCGCCACGCGTGCGAGGCGTGTGACAAAACGTTCTCGGAGCTGTGCGCCCTGCGCAGACACTCGCGCGTGCACACCGGGGAGAAGGTCGAGAAGAGGTATCGATGCGATATATGCGATAAAAgGTTCTGCGACAGCAGCCAGCTGGCGGCGCACTCGGCGCGCCACACGGGCGTGCGGCCGTGCGCGTGCGAGTGCGGGAAGACCTTCCCGTCGCGCCGCCTGTTGGCCTCGCACCGTCTCGTGCACTCCGACCTCAAGCGGTTCGCGTGCGACTACTGCGATAAACGATTTCGTCACGAATCGACTCGCAATACGCACCACCGCACCCATACGGGCGAGAAGCCTTACATCTGCTCGATATGCGGCAAGACGTTCATACAGAGCTCTAACCTTAAGCTACACATGCGTACTCATAcggGTGAAAGACCATACACGTGTGACGTTTGTGGGCGGAAGTTTACTTCTGGCTCCTCACTAACGTGTCACCGTCGCACGCACACCGGGGAGAAACCCTACAGTTGTCATATCTGTGGTAAAAgATTTGCTAGGACAGACATTCGCACACACATGCGCCAGCACACCGGCGAACGGCCTTTCGCCTGCTGTGTTTGTCCCAAGAAGTTCATCAATGCGGCACGACTACGTGACCACTATCTCATACATACGGgTGAAAAACCCTATGAGTGTGCCAtttgtaatgaaaaatttaaaaagaaaagttatCTGGCGAAACATCTAAGAAGCCAcgataaagagaaaaaaataaaagagaaaaagaTTGTAATTGTTCAACAATTACCTTTCGTGatggataataatttaatttatgcagAGAGTGCCACTAATGAAATAGCTATAAAAGATACTCCAGAATCGAATGTTGATACTGAATACGAGAATAAAGAAGTCACTTTGGTTACAGAAGAAGTTCCTTTGGAAGTATCTGGAGAGCTTGTATTGGAGGATGACAGTAATGTGAAGGCAGAACTCGTAGTGGTCAATGTTGgacataatgatataaattacgaAGAGGGGGAAATATgtctaaatacaaataatattaagtatgaaaATAATCGAAATACACATAATGGTAGTTTAGTGACTGTGGATGAAGGTGAGGTGAATATATCCGAGTCCGCCTCAGTGTTGGAAGGAAGTGCAGTGAAATTATACCAGTTAGACCAAAGTTTAGTGCAAATACATACATCTGGCCGACATATTACTATCCAAAAGATTACTAGTAAAATGACTACTAActtcaattaa
Protein Sequence: MSNQNNENSNDLENEIPLTAIVYNKHIEQSKTVMPKNMFQNESTSNPGISIDIKYVCRICLTAENNMISLMSTVGCDVLADMFTSISSIKVSSHESLPLQICVPCQRDILHCYKFKLKCNKTNNILRSLLKDKCNSNLIGYNTSDLDKVDQITQTMFDDVVRLNQMQQNEINTLKDETLKEEQDLKTEINEDHDEIEYLEDDIFYDNDVKNEEDKRSEETLELTDKEKKYNQKSFKAKKKRFNCNNCFKNFLKSKTLRIHVQTCHSGKTFPPFGCGQCKDSFNSQEDLHIHSALHVKGTHWTCNKCFKDFTERNRFRRHIRRHMETKRHACEACDKTFSELCALRRHSRVHTGEKVEKRYRCDICDKRFCDSSQLAAHSARHTGVRPCACECGKTFPSRRLLASHRLVHSDLKRFACDYCDKRFRHESTRNTHHRTHTGEKPYICSICGKTFIQSSNLKLHMRTHTGERPYTCDVCGRKFTSGSSLTCHRRTHTGEKPYSCHICGKRFARTDIRTHMRQHTGERPFACCVCPKKFINAARLRDHYLIHTGEKPYECAICNEKFKKKSYLAKHLRSHDKEKKIKEKKIVIVQQLPFVMDNNLIYAESATNEIAIKDTPESNVDTEYENKEVTLVTEEVPLEVSGELVLEDDSNVKAELVVVNVGHNDINYEEGEICLNTNNIKYENNRNTHNGSLVTVDEGEVNISESASVLEGSAVKLYQLDQSLVQIHTSGRHITIQKITSKMTTNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080916;
90% Identity: iTF_01506557; iTF_01507437;
80% Identity: -