Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990558.1:4618452-4628270[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.32 25 5.9 6.1 1 23 243 266 243 266 0.97

2 12 0.34 27 5.8 0.8 3 23 276 296 274 296 0.92

3 12 0.0013 0.098 13.5 3.8 2 23 303 324 302 324 0.97

4 12 0.00025 0.019 15.7 1.0 1 23 330 352 330 352 0.97

5 12 1.8e-06 0.00014 22.4 1.3 1 23 361 383 361 383 0.96

6 12 0.00049 0.038 14.8 0.5 3 23 389 410 388 410 0.93

7 12 0.00041 0.032 15.0 7.0 1 23 416 438 416 438 0.97

8 12 1.5e-09 1.2e-07 32.1 0.8 1 23 444 466 444 466 0.98

9 12 0.00017 0.013 16.2 3.5 1 23 472 494 472 494 0.99

10 12 0.00073 0.056 14.2 2.6 1 23 500 521 500 521 0.96

11 12 0.00081 0.063 14.1 0.7 1 23 527 549 527 549 0.96

12 12 1.2e-06 9.3e-05 23.0 1.3 1 23 555 577 555 577 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.32	25	5.9	6.1	1	23	243	266	243	266	0.97
2	12	0.34	27	5.8	0.8	3	23	276	296	274	296	0.92
3	12	0.0013	0.098	13.5	3.8	2	23	303	324	302	324	0.97
4	12	0.00025	0.019	15.7	1.0	1	23	330	352	330	352	0.97
5	12	1.8e-06	0.00014	22.4	1.3	1	23	361	383	361	383	0.96
6	12	0.00049	0.038	14.8	0.5	3	23	389	410	388	410	0.93
7	12	0.00041	0.032	15.0	7.0	1	23	416	438	416	438	0.97
8	12	1.5e-09	1.2e-07	32.1	0.8	1	23	444	466	444	466	0.98
9	12	0.00017	0.013	16.2	3.5	1	23	472	494	472	494	0.99
10	12	0.00073	0.056	14.2	2.6	1	23	500	521	500	521	0.96
11	12	0.00081	0.063	14.1	0.7	1	23	527	549	527	549	0.96
12	12	1.2e-06	9.3e-05	23.0	1.3	1	23	555	577	555	577	0.99

Sequence Information

Coding Sequence: ATGTCGAACCAAAACAACGAAAATTCTAATGATTTAGAAAATGAAATACCACTAACTGCTATAGTATATAACAAACACATAGAACAAACTAAAGCAGTCATGGCAAAAAATATGTTTCAAAATGAATCTACATCAAACCCAGGGATATCTATAGATATTAAATATGTTTGTCGAATATGCCTAATGGCTGAAAATAATATGATTTCACTGATGTCTACAGTTGGATGTGATGTCTTAGCTGATATGTTCACGTCTATTTCTTCCATTAAAGTTTCTTCCGATGAAAGCCTTCCATTACAAATATGTGTTTCATGTCGAAAGGATATCTTACATTGCTATAAATTTAAGCTCAAATGTAACAAGACAAACAACATTTTGAGGTCTTTATTAAAGGACAAATGTAATAGTAACCTTATTGGCTACAATACTAGCGATTTAGATAAAGTGGATCAGATCACACAGACAATGTTTGATGATGTTGTCAGATTAAATAAAATGCAACAGAATGAAATTAATACTATAAAAGATGAAACATTAAAAGAAGAGCAAGATCTTAAAACAGAAATTAATGAAGATCATGAAGAAATTGAATACTTAGAGGATGACATTTTTTATGACAATGATGCTGTTAAAAATGAAGAGGATAAAAGAAGTGAGGAGACACTTGAATTAACAGATAAAGAAAAAAATTATAAACAAAAAAGTTTTAAAGCAAAGAAGAAAAGATTTAATTGCAACAATTGTTTTAAGAATTTCCTAAAATCTAAAACACTGAGAACACACGTCCAGACATGTCATAGTGGTAAAACATTCCCGCCATTTGGTTGTGGACAGTGCAAAGATTCCTTTAATTCTCAAGAAGATCTTCACATACATTCGGCACTGCACGTCAAGGGTACCCACTGGACCTGCAATAAATGTTTCAAAGACTTTACAGAACGCAACAGATTCAGACGTCACATCCGGCGTCACATGGAGACGAAGCGCTACGCGTGCGAGGCGTGTGACAAGACGTTCTCGGAGCTGTGCGCCCTGCGCAGACACTCGCGCGTGCACACCGGGGAGAAGGTCGAGAAAAAGTATCGATGTGATATATGCGATAAAAGGTTCTGCGACAGCAGCCAGCTGGCGGCGCACTCGGCGCGCCACACGGGCGTGCGGCCGTGCGCGTGCGAGTGCGGGAAGACCTTCCCGTCGCGCCGCCTGCTGGCCTCGCACCGCCTCGTGCACTCCGACCTCAAGCGGTTCGCGTGCGACTACTGCGATAAACGATTTCGTCACGAGTCGACTCGCAATACGCACCACCGCACCCATACGGGCGAAAAGCCTTACATCTGCTCGATATGCGGCAAGACGTTCATACAGAGCTCTAACCTTAAGCTACACATGCGCACTCATACGGGTGAAAGACCATACACGTGTGACGTTTGCGGGCGGAAGTTTACTTCTGGCTCCTCACTAACGTGTCACCGTCGCACGCACACCGGGGAGAAACCCTACAGTTGTCATATTTGTGGTAAAAGATTTGCTAGGACAGACATTCGCACACACATGCGCCAGCACACCGGTGAACGACCTTTCGCCTGCTGTGTTTGTCCCAAGAAGTTCATCAATGCGGCACGACTACGTGACCACTATCTCATACATACGGGTGAAAAACCCTATGAGTGCGCCATTTGTAATGAAAAATTTAAAAAGAAAAGTTATTTGGCGAAACATCTAAGAAGCCACGATAAAGAGAAAAAAATAAAAGAGAAAAAGATTGTAATTGTTCAACAATTACCTTTCATGATGGATAATAATTTAATTTATGCAGAGAGTGCCACTAATGAAATAGCTATAAAAGATGCTCCAGAATCGAATGTTGATACTGAATACGAGAATAAAGAAGTCACTTTGGTTACAGAAGAAGTTCCTTTGGAAGTATCTGGAGAGCTTGTATTGCAGGATGACAGTAATGTGAAGGCAGAACTCGTAGTGGTCAATGTTGGACATAATGATATAAATTACGAAGAGGGGGAAATATGTCTAAATACAAATAATATTAAGTATGAAAATGATCGAAATACACATAATGGTAGCTTAGTGACTGTGAATGAAGGTGAGGTGAATATATCCGAGTCCGCCTCAGTGGTGGAAGGAAGTGCAGTGAAATTATACCAGTTAGACCAAAGTTTAGTGCAAATACATACGTCTGGCCGACATATCACTATCCAAAAGATTACTAGTAAAATGACTACAAACTTCAATTAA
Protein Sequence: MSNQNNENSNDLENEIPLTAIVYNKHIEQTKAVMAKNMFQNESTSNPGISIDIKYVCRICLMAENNMISLMSTVGCDVLADMFTSISSIKVSSDESLPLQICVSCRKDILHCYKFKLKCNKTNNILRSLLKDKCNSNLIGYNTSDLDKVDQITQTMFDDVVRLNKMQQNEINTIKDETLKEEQDLKTEINEDHEEIEYLEDDIFYDNDAVKNEEDKRSEETLELTDKEKNYKQKSFKAKKKRFNCNNCFKNFLKSKTLRTHVQTCHSGKTFPPFGCGQCKDSFNSQEDLHIHSALHVKGTHWTCNKCFKDFTERNRFRRHIRRHMETKRYACEACDKTFSELCALRRHSRVHTGEKVEKKYRCDICDKRFCDSSQLAAHSARHTGVRPCACECGKTFPSRRLLASHRLVHSDLKRFACDYCDKRFRHESTRNTHHRTHTGEKPYICSICGKTFIQSSNLKLHMRTHTGERPYTCDVCGRKFTSGSSLTCHRRTHTGEKPYSCHICGKRFARTDIRTHMRQHTGERPFACCVCPKKFINAARLRDHYLIHTGEKPYECAICNEKFKKKSYLAKHLRSHDKEKKIKEKKIVIVQQLPFMMDNNLIYAESATNEIAIKDAPESNVDTEYENKEVTLVTEEVPLEVSGELVLQDDSNVKAELVVVNVGHNDINYEEGEICLNTNNIKYENDRNTHNGSLVTVNEGEVNISESASVVEGSAVKLYQLDQSLVQIHTSGRHITIQKITSKMTTNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080916;
90% Identity: iTF_01508270;
80% Identity: -