Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992249.1:8938197-8948407[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.35 31 5.8 6.5 1 23 244 267 244 267 0.95

2 12 0.00088 0.078 14.0 0.6 1 23 274 296 274 296 0.92

3 12 0.0013 0.11 13.5 3.8 2 23 303 324 302 324 0.97

4 12 0.00011 0.0099 16.8 0.6 1 23 330 352 330 352 0.97

5 12 2.4e-06 0.00021 22.1 0.6 1 23 361 383 361 383 0.96

6 12 0.00094 0.083 13.9 0.3 3 23 389 410 388 410 0.93

7 12 0.00041 0.037 15.0 7.0 1 23 416 438 416 438 0.97

8 12 1.6e-09 1.4e-07 32.1 0.8 1 23 444 466 444 466 0.98

9 12 0.00017 0.015 16.2 3.5 1 23 472 494 472 494 0.99

10 12 0.00073 0.065 14.2 2.6 1 23 500 521 500 521 0.96

11 12 0.00081 0.072 14.1 0.7 1 23 527 549 527 549 0.96

12 12 1.2e-06 0.00011 23.0 1.3 1 23 555 577 555 577 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.35	31	5.8	6.5	1	23	244	267	244	267	0.95
2	12	0.00088	0.078	14.0	0.6	1	23	274	296	274	296	0.92
3	12	0.0013	0.11	13.5	3.8	2	23	303	324	302	324	0.97
4	12	0.00011	0.0099	16.8	0.6	1	23	330	352	330	352	0.97
5	12	2.4e-06	0.00021	22.1	0.6	1	23	361	383	361	383	0.96
6	12	0.00094	0.083	13.9	0.3	3	23	389	410	388	410	0.93
7	12	0.00041	0.037	15.0	7.0	1	23	416	438	416	438	0.97
8	12	1.6e-09	1.4e-07	32.1	0.8	1	23	444	466	444	466	0.98
9	12	0.00017	0.015	16.2	3.5	1	23	472	494	472	494	0.99
10	12	0.00073	0.065	14.2	2.6	1	23	500	521	500	521	0.96
11	12	0.00081	0.072	14.1	0.7	1	23	527	549	527	549	0.96
12	12	1.2e-06	0.00011	23.0	1.3	1	23	555	577	555	577	0.99

Sequence Information

Coding Sequence: ATGGACAAGAAATCCAATCAAAATTCTGATGATTTAGAAAATGAAATACCTCTAACTGCAATAGTAAATAATAAACATGTAGAACAAACTAATACAGTCATAGCTAAAAATTGTTTTCAAAATGAATTTAAAACAAACCCTGATATCTCTATAGACATGAAATATGTTTGTCGAATATGCCTAATGGCTGAAAATAATATGATATCACTTATGTCTACAGTTGGATGTGATGTCTTAGCTGATATGTTTACTTCTATTTCTTCCATTAAAGTTTCTTTAGAAGAAAGCCTTCCATTACAAATATGTGCTTCATGTCAAGGTGATATCTTACATTGTTATAAATTCAAGCTAAAATGTAACAAGACAAACAATATCTTAAGATCCCTATTAAAAGAAAAATGTAATAGTAACTTAAGTAGCTACAATACTGGTCCTTTAGATAAGATGGATCAGAAAACACGGACAATATTTGATGATTTTAGAAAAACAAACCAAATGCAACCAAATGAAATTAGTACTATAAAAGAAGAAACTTGTTTAAAAGAAGAGCAAGATGTGAAAAAGGAAATCAATGAGGACCATGAAGAAATTGAATATTTGGAGGATGATATCTTTTATGATAATGAAGCCGTCGACATTGAAGATGATAGAAGAAGTGAGGAAAGAATAGAATTCACAGATAGAGCAAAAAATGACAATCAAAAACGCTTCAAAGCAAAAAAGAAACGATTTAATTGCAACAAATGTTTTAAGAATTTCCTAAAATCAAAAACACTGAGAACACACATCCAGCAGTGTCATAGCAAAACAATAACACCATTTGCTTGTGGACAGTGCAAAGAATCCTTTACTTCTCAAGAAGATCTCCACATACATTCGGCATTGCATGTCAAGGGTACACACTGGACATGCAATAAATGTTTTAAGGATTTTACAGAACGCAACAGATTCAGACGTCATATCCGGCGTCACATGGAGACGAAGCGGTACGCGTGCGAGGCGTGCGACAAGACGTTCTCAGAGCTATGCGCTCTGCGTCGCCACGCGCGCGTGCACACCGGAGAGAAGGTCGAGAAGAAGTATCCCTGCGATATATGCGACAAAAGGTTCTGCGACAGCAGCCAGCTGGCGGCGCACTCGGCGCGCCACACGGGCGTGCGGCCGTGCGCGTGCGAGTGCGGGAAGGCGTTCCCGTCGCGCCGCCTGCTCGCCTCGCACCGCCTCGTGCACTCCGACCTCAAGCGCTTCGCGTGCGACTACTGCGACAAGCGATTCCGTCACGAGTCGACACGGAACACACACCACCGCACCCATACGGGCGAGAAGCCTTACATCTGCTCGATATGCGGCAAGACGTTCATACAGAGCTCGAACCTCAAGCTGCATATGCGCACTCATACGGGTGAAAGACCGTACACTTGCGACGTTTGCGGGCGAAAGTTTACTTCTGGCTCCTCACTGACGTGTCACCGTCGCACGCACACCGGGGAGAAACCCTACAGTTGCCATATTTGCGGAAAAAGGTTTGCTAGAACAGACATCCGCACACACATGCGCCAGCACACCGGCGAACGTCCCTTCGCCTGCTGTGTTTGCCCCAAGAAGTTTATCAATGCAGCACGACTACGTGACCACTATCTCATACATACGGGCGAACAACCCTACGAATGCGCTATTTGTAACGAAAAATTCAAAAAGAAAAGTTATTTGGCGAAACATCTCAGAAGCCACAATAAAGAGAAAAAAGTAAAAGATAAGAAGATTGTAATTGTCCAACAATTACCTTTTGTGATGGATAATAATTTAATATATGCTGAAAATGGAAGTAATGATATTGCTATAAAAGGAACCACAAAATCAAATGGTGGTAAGGATTATGAGAATAAGGAAGTCACTTTGGTTACAGAAGAAGTTCCTTTGGAAGTATCCGGAGAGCTTGTATTGCAGGATGACAGTAATGTGAAGGCCAACCTCGTAGTGGTCAATGTTGGGCAAAATAATATCAATTACGAAGAGGGAGATATATGTTTAAATACAAACAATATTGATTTTGAAAATAATCCAAATACACATAATGGTAGTTTGGTGTCTGTGAATGAAGGCGAGGTGAATATATCGGACTCCACCTCGGTCTTGGAGGGAAGTGCAGTGAAATTATACCAGTTGGACCAAAGTTTAGTGCAAATACATACATCTGGCCGACATATCACTATCCAAAAAATTACTAGTAAAATGACTACAAACTTCAATTAA
Protein Sequence: MDKKSNQNSDDLENEIPLTAIVNNKHVEQTNTVIAKNCFQNEFKTNPDISIDMKYVCRICLMAENNMISLMSTVGCDVLADMFTSISSIKVSLEESLPLQICASCQGDILHCYKFKLKCNKTNNILRSLLKEKCNSNLSSYNTGPLDKMDQKTRTIFDDFRKTNQMQPNEISTIKEETCLKEEQDVKKEINEDHEEIEYLEDDIFYDNEAVDIEDDRRSEERIEFTDRAKNDNQKRFKAKKKRFNCNKCFKNFLKSKTLRTHIQQCHSKTITPFACGQCKESFTSQEDLHIHSALHVKGTHWTCNKCFKDFTERNRFRRHIRRHMETKRYACEACDKTFSELCALRRHARVHTGEKVEKKYPCDICDKRFCDSSQLAAHSARHTGVRPCACECGKAFPSRRLLASHRLVHSDLKRFACDYCDKRFRHESTRNTHHRTHTGEKPYICSICGKTFIQSSNLKLHMRTHTGERPYTCDVCGRKFTSGSSLTCHRRTHTGEKPYSCHICGKRFARTDIRTHMRQHTGERPFACCVCPKKFINAARLRDHYLIHTGEQPYECAICNEKFKKKSYLAKHLRSHNKEKKVKDKKIVIVQQLPFVMDNNLIYAENGSNDIAIKGTTKSNGGKDYENKEVTLVTEEVPLEVSGELVLQDDSNVKANLVVVNVGQNNINYEEGDICLNTNNIDFENNPNTHNGSLVSVNEGEVNISDSTSVLEGSAVKLYQLDQSLVQIHTSGRHITIQKITSKMTTNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080916;
90% Identity: -
80% Identity: -