g6446.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000010.1:7281942-7291134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.47 36 5.6 0.2 3 21 8 27 6 28 0.85 2 12 0.024 1.9 9.6 0.1 2 21 34 53 33 54 0.94 3 12 1.2 91 4.3 0.2 1 12 205 216 205 225 0.85 4 12 2e-05 0.0015 19.3 0.2 1 23 377 399 377 399 0.98 5 12 9.7e-06 0.00074 20.3 1.2 1 23 408 430 408 430 0.98 6 12 0.00035 0.027 15.4 1.6 3 23 484 504 482 504 0.96 7 12 0.00061 0.047 14.6 2.6 1 23 520 542 520 542 0.98 8 12 1.3e-06 0.0001 23.0 4.5 1 23 548 570 548 570 0.98 9 12 0.0027 0.21 12.6 6.2 1 23 576 598 576 598 0.97 10 12 1.8e-06 0.00014 22.6 0.4 1 23 604 626 604 626 0.98 11 12 0.00024 0.018 15.9 0.1 1 23 630 652 630 652 0.98 12 12 0.00012 0.0093 16.8 0.1 1 23 660 683 660 683 0.96
Sequence Information
- Coding Sequence
- ATGGGAGATTTAGTATTATATTGCCCTCTTTGTTGTAATGCTACATTTGATTCGAAACAGTCTCTCATTGAACACATATCTATTATTtcttcaaatttagtatgcccCTTATGTACAAATAGGTTTTCTTCAATAGATCAATTTACTGATCATTTAAAACTCGATAATTGTGAACTTGTAAATGAAGTTCAAACcattatatttgaaacaaatacacatattgaaaataatgataattctgaagataatacaaaacataaattagAACTTAATGAAAATGGAAATCATTTGCAAAAGGATGatttacaaaatcaattatCAGAACACACAGTTAAAGTTACTAATGGTTCAGATGATAGTAAAATGTATGTTGAGTTGTTAGGCAAGCAAATGCTTAAGCCATACCTACAGACCCAAGAATTAAAGTTGGTGAAGGAAGATGGACAGAGTCGATATGTGATTCTTGCAGATGAGGATTCTGTTTTAAATCAAGGCGTTTCAATTGTAACTAAGCAAAACATTGATGGGACTATATCTTTAACTGCTCTTAAAGATGAGGAACCAGATACAAGCACTTTAGAAGAAGATACTGACAAAAGCCAGGATGAAATATACAGCTGTAATGCATGTGGAGTATCATTTTCATCAGTTTTGGAACACATACAGAACTATCATAATGATCAAGATGTTGTGGTTGAGGAGCCCtttgaagttaataatattCCAATGGAATATGAAGAAGTTGCTAATGAAGAAGTATTAGAAGATAAACAGCAGTCGAGACGGATGATAACTGagacaggagatattattgaaACACCATTAACAGAAGATGAGGAAACAGTTCCGAACAAACCAGTTAAGGTTGTTATACCAATAAAGACGGATTCAGTAGACAAACAGGGACGTGCGTGTACGCGTCGATATGTACAGATAGACAAATTCTGTAACAGCATCATAAAAGACATCAAACCAACCAATGaaaaaaatggtcCATATCACAATGTGGTTGTGAAGGAAATGCAGACAACCTCGGGTAACAAAATGCGGGTGTACAATTGTATGTCGTGCAATGTTTACGTCTCTTCGCTGTCGGAATTCAAACTGCATCCATGcaaaatttTGAAGTACCCTTGTCCACAATGTCCAGTCGCTTATGAAAACTCAAAATCATTATGTGCTCACATGAAAGTACATAAATCGAAAGGAGcccCTGTGAAGTTCGAATGTGAAATTTGTTCAACGACATTTCCTACCAGCAAGTCGTTAAAATTACACAAGAGGATGCACGACCCTATCAAATCTCGTCCAATAGAACCTCCAGTGGAAACATCTGAGGGTAACATAGCGAGTAACAACAAGTTCCTATGTTCGATATGTGACAAGTTGATACCGATCGACTACCGGACCATACATCAGAACTCGCACAAGGGCAGCAACAAGATGAACTGCGACATATGCAACAAGAAGTTTCATTCTCAGGAATATTTGGATATGCATATGAGTGTACATAGTATAGATAAGGTAATAGTCGGCAAACAAGACAAGTCGCTTCCGTACACGTGTCTGTATTGCAATAGGAAGTTCGCAAGACCACACGAAAAGGTGAAGCATGAAAGGATACATACAGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACGGGCGCGCGCCCCTACGCGTGTCCGCACTGCAACAAGAGATTCAAAGCGCACAGCGTGTACAATCATCACTTGTTAACACATTCAGAAGTGCGCGCGTACAAATGTCCGTACTGCCCCAAAGCGTTCAAGACGTCGGTTCAGCTCGCCGGCCACAAGAACTCGCACACTAAGCCGTTCTCTTGCCAACAATGTAACAGACCGTTCGCATCGTTGTACGCGGTGCGCGTGCACATGGAGATCCACTCGCGACAGAACAGCCTGAAGTTCTCGTGCTCCATGTGCGGAGCGAGCTACGCGCGGGCCTTCGCCCTCAAGGACCACATCAAGCAAGTGCACAAGCAGGAGGTCGACTCGCCCGCCCATCTCACGATACTTAAAGAAGAAGACTGTATGGTGCAAGAGAACGTAGACATCGACTCGGACGGAATGCACCTTAACAAAGATCTGCCGCAGGAGATAAACGACTTGGATATACATACTAACGAACTGATTGTAccgtaa
- Protein Sequence
- MGDLVLYCPLCCNATFDSKQSLIEHISIISSNLVCPLCTNRFSSIDQFTDHLKLDNCELVNEVQTIIFETNTHIENNDNSEDNTKHKLELNENGNHLQKDDLQNQLSEHTVKVTNGSDDSKMYVELLGKQMLKPYLQTQELKLVKEDGQSRYVILADEDSVLNQGVSIVTKQNIDGTISLTALKDEEPDTSTLEEDTDKSQDEIYSCNACGVSFSSVLEHIQNYHNDQDVVVEEPFEVNNIPMEYEEVANEEVLEDKQQSRRMITETGDIIETPLTEDEETVPNKPVKVVIPIKTDSVDKQGRACTRRYVQIDKFCNSIIKDIKPTNEKNGPYHNVVVKEMQTTSGNKMRVYNCMSCNVYVSSLSEFKLHPCKILKYPCPQCPVAYENSKSLCAHMKVHKSKGAPVKFECEICSTTFPTSKSLKLHKRMHDPIKSRPIEPPVETSEGNIASNNKFLCSICDKLIPIDYRTIHQNSHKGSNKMNCDICNKKFHSQEYLDMHMSVHSIDKVIVGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEIHSRQNSLKFSCSMCGASYARAFALKDHIKQVHKQEVDSPAHLTILKEEDCMVQENVDIDSDGMHLNKDLPQEINDLDIHTNELIVP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843748;
- 90% Identity
- iTF_01506561; iTF_01080105; iTF_01508271; iTF_01507442; iTF_01080921; iTF_01078416; iTF_01079254; iTF_01078418;
- 80% Identity
- -