Basic Information

Insect: Nymphalis c-album
Gene Symbol: -
Assembly: GCA_905332345.1
Location: CAJOBY010000010.1:7281942-7291134[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.48 37 5.5 0.2 3 21 8 27 6 28 0.85

2 12 0.025 1.9 9.6 0.1 2 21 34 53 33 54 0.94

3 12 1.2 93 4.2 0.2 1 12 217 228 217 237 0.85

4 12 2e-05 0.0015 19.3 0.2 1 23 389 411 389 411 0.98

5 12 1e-05 0.00076 20.3 1.2 1 23 425 447 425 447 0.98

6 12 0.00036 0.027 15.4 1.6 3 23 501 521 499 521 0.96

7 12 0.00063 0.048 14.6 2.6 1 23 537 559 537 559 0.98

8 12 1.4e-06 0.0001 23.0 4.5 1 23 565 587 565 587 0.98

9 12 0.0028 0.21 12.6 6.2 1 23 593 615 593 615 0.97

10 12 1.8e-06 0.00014 22.6 0.4 1 23 621 643 621 643 0.98

11 12 0.00025 0.019 15.9 0.1 1 23 647 669 647 669 0.98

12 12 0.00013 0.0096 16.8 0.1 1 23 677 700 677 700 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.48	37	5.5	0.2	3	21	8	27	6	28	0.85
2	12	0.025	1.9	9.6	0.1	2	21	34	53	33	54	0.94
3	12	1.2	93	4.2	0.2	1	12	217	228	217	237	0.85
4	12	2e-05	0.0015	19.3	0.2	1	23	389	411	389	411	0.98
5	12	1e-05	0.00076	20.3	1.2	1	23	425	447	425	447	0.98
6	12	0.00036	0.027	15.4	1.6	3	23	501	521	499	521	0.96
7	12	0.00063	0.048	14.6	2.6	1	23	537	559	537	559	0.98
8	12	1.4e-06	0.0001	23.0	4.5	1	23	565	587	565	587	0.98
9	12	0.0028	0.21	12.6	6.2	1	23	593	615	593	615	0.97
10	12	1.8e-06	0.00014	22.6	0.4	1	23	621	643	621	643	0.98
11	12	0.00025	0.019	15.9	0.1	1	23	647	669	647	669	0.98
12	12	0.00013	0.0096	16.8	0.1	1	23	677	700	677	700	0.96

Sequence Information

Coding Sequence: ATGGGAGATTTAGTATTATATTGCCCTCTTTGTTGTAATGCTACATTTGATTCGAAACAGTCTCTCATTGAACACATATCTATTATTtcttcaaatttagtatgcccCTTATGTACAAATAGGTTTTCTTCAATAGATCAATTTACTGATCATTTAAAACTCGATAATTGTGAACTTGTAAATGAAGTTCAAACcattatatttgaaacaaatacacatattgaaaataatgataattctgaagataatacaaaacataaattagAACTTAATGAAAATGGAAATCATTTGCAAAAGGATGatttacaaaatcaattatCAGAACACACAGTTAAAGTTACTAATGGTTCAGATGATAGTAAAATGTATGTTGAGTTGTTAGGCAAGCAAATGCTTAAGCCATACCTACAGACCCAAGAATTAAAGTTGGTGAAGGAAGATGGACAGAGTCGATATGTGATTCTTGCAGATGAGGATTCTGTTTTAAATCAAGGCGTTTCAATTGTAACTAAGCAAAACATTGATGGGACTATATCTTTAACTGCTCTTAAAGGTACatacattaatttgaatataaataccaTGATAGATGAGGAACCAGATACAAGCACTTTAGAAGAAGATACTGACAAAAGCCAGGATGAAATATACAGCTGTAATGCATGTGGAGTATCATTTTCATCAGTTTTGGAACACATACAGAACTATCATAATGATCAAGATGTTGTGGTTGAGGAGCCCtttgaagttaataatattCCAATGGAATATGAAGAAGTTGCTAATGAAGAAGTATTAGAAGATAAACAGCAGTCGAGACGGATGATAACTGagacaggagatattattgaaACACCATTAACAGAAGATGAGGAAACAGTTCCGAACAAACCAGTTAAGGTTGTTATACCAATAAAGACGGATTCAGTAGACAAACAGGGACGTGCGTGTACGCGTCGATATGTACAGATAGACAAATTCTGTAACAGCATCATAAAAGACATCAAACCAACCAATGaaaaaaatggtcCATATCACAATGTGGTTGTGAAGGAAATGCAGACAACCTCGGGTAACAAAATGCGGGTGTACAATTGTATGTCGTGCAATGTTTACGTCTCTTCGCTGTCGGAATTCAAACTGCATCCATGcaaaatttTGAAGTACCCTTGTCCACAATGTCCAGTCGCTTATGAAAACTCAAAATCATTATGTGCTCACATGAAAGTACATAAATCGAAAGGAGaaaataattatatagcccCTGTGAAGTTCGAATGTGAAATTTGTTCAACGACATTTCCTACCAGCAAGTCGTTAAAATTACACAAGAGGATGCACGACCCTATCAAATCTCGTCCAATAGAACCTCCAGTGGAAACATCTGAGGGTAACATAGCGAGTAACAACAAGTTCCTATGTTCGATATGTGACAAGTTGATACCGATCGACTACCGGACCATACATCAGAACTCGCACAAGGGCAGCAACAAGATGAACTGCGACATATGCAACAAGAAGTTTCATTCTCAGGAATATTTGGATATGCATATGAGTGTACATAGTATAGATAAGGTAATAGTCGGCAAACAAGACAAGTCGCTTCCGTACACGTGTCTGTATTGCAATAGGAAGTTCGCAAGACCACACGAAAAGGTGAAGCATGAAAGGATACATACAGGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACGGGCGCGCGCCCCTACGCGTGTCCGCACTGCAACAAGAGATTCAAAGCGCACAGCGTGTACAATCATCACTTGTTAACACATTCAGAAGTGCGCGCGTACAAATGTCCGTACTGCCCCAAAGCGTTCAAGACGTCGGTTCAGCTCGCCGGCCACAAGAACTCGCACACTAAGCCGTTCTCTTGCCAACAATGTAACAGACCGTTCGCATCGTTGTACGCGGTGCGCGTGCACATGGAGATCCACTCGCGACAGAACAGCCTGAAGTTCTCGTGCTCCATGTGCGGAGCGAGCTACGCGCGGGCCTTCGCCCTCAAGGACCACATCAAGCAAGTGCACAAGCAGGAGGTCGACTCGCCCGCCCATCTCACGATACTTAAAGAAGAAGACTGTATGGTGCAAGAGAACGTAGACATCGACTCGGACGGAATGCACCTTAACAAAGATCTGCCGCAGGAGATAAACGACTTGGATATACATACTAACGAACTGATTGTAccgtaa
Protein Sequence: MGDLVLYCPLCCNATFDSKQSLIEHISIISSNLVCPLCTNRFSSIDQFTDHLKLDNCELVNEVQTIIFETNTHIENNDNSEDNTKHKLELNENGNHLQKDDLQNQLSEHTVKVTNGSDDSKMYVELLGKQMLKPYLQTQELKLVKEDGQSRYVILADEDSVLNQGVSIVTKQNIDGTISLTALKGTYINLNINTMIDEEPDTSTLEEDTDKSQDEIYSCNACGVSFSSVLEHIQNYHNDQDVVVEEPFEVNNIPMEYEEVANEEVLEDKQQSRRMITETGDIIETPLTEDEETVPNKPVKVVIPIKTDSVDKQGRACTRRYVQIDKFCNSIIKDIKPTNEKNGPYHNVVVKEMQTTSGNKMRVYNCMSCNVYVSSLSEFKLHPCKILKYPCPQCPVAYENSKSLCAHMKVHKSKGENNYIAPVKFECEICSTTFPTSKSLKLHKRMHDPIKSRPIEPPVETSEGNIASNNKFLCSICDKLIPIDYRTIHQNSHKGSNKMNCDICNKKFHSQEYLDMHMSVHSIDKVIVGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEIHSRQNSLKFSCSMCGASYARAFALKDHIKQVHKQEVDSPAHLTILKEEDCMVQENVDIDSDGMHLNKDLPQEINDLDIHTNELIVP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00843748;
90% Identity: iTF_01078415;
80% Identity: -