Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989992.1:7472228-7481911[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.43 40 5.5 0.2 3 21 8 27 6 28 0.85

2 12 0.023 2.1 9.6 0.1 2 21 34 53 33 54 0.94

3 12 1.1 1e+02 4.3 0.2 1 12 205 216 205 225 0.85

4 12 1.8e-05 0.0017 19.3 0.2 1 23 377 399 377 399 0.98

5 12 9.2e-06 0.00085 20.3 1.4 1 23 413 435 413 435 0.98

6 12 0.00032 0.03 15.4 1.6 3 23 489 509 487 509 0.96

7 12 0.00057 0.052 14.6 2.6 1 23 525 547 525 547 0.98

8 12 1.2e-06 0.00011 23.0 4.5 1 23 553 575 553 575 0.98

9 12 0.0025 0.23 12.6 6.2 1 23 581 603 581 603 0.97

10 12 1.7e-06 0.00015 22.6 0.4 1 23 609 631 609 631 0.98

11 12 0.00022 0.021 15.9 0.1 1 23 635 657 635 657 0.98

12 12 0.00011 0.01 16.8 0.1 1 23 665 688 665 688 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.43	40	5.5	0.2	3	21	8	27	6	28	0.85
2	12	0.023	2.1	9.6	0.1	2	21	34	53	33	54	0.94
3	12	1.1	1e+02	4.3	0.2	1	12	205	216	205	225	0.85
4	12	1.8e-05	0.0017	19.3	0.2	1	23	377	399	377	399	0.98
5	12	9.2e-06	0.00085	20.3	1.4	1	23	413	435	413	435	0.98
6	12	0.00032	0.03	15.4	1.6	3	23	489	509	487	509	0.96
7	12	0.00057	0.052	14.6	2.6	1	23	525	547	525	547	0.98
8	12	1.2e-06	0.00011	23.0	4.5	1	23	553	575	553	575	0.98
9	12	0.0025	0.23	12.6	6.2	1	23	581	603	581	603	0.97
10	12	1.7e-06	0.00015	22.6	0.4	1	23	609	631	609	631	0.98
11	12	0.00022	0.021	15.9	0.1	1	23	635	657	635	657	0.98
12	12	0.00011	0.01	16.8	0.1	1	23	665	688	665	688	0.96

Sequence Information

Coding Sequence: ATGGGAGATTTAGTATTATATTGCCCTCTTTGTTGTAATGCTACATTTGACTCAAAACAGTCACTCATTGAACACATATCTATTATTTCTTCAAATTTAGTATGTCCCTTATGTACAAATAGATTTTCTTCAATAGATCAATTTACTGATCATTTAAAACTCGATAATTGCGAACTTGTAAATGAAGTTCAAACCATTATATTTGAAACAAATACACAAATTGAAAGTAATGATAATTCTGATGATAATTCAAAACTTAAACTAGAACTAAATAAAAATGGAAATAATTTGCAAAAAGACGATTCACAAAATCAAATATCAGAACACACGGTTAAAGTTAGCAATGGTTCGGATGAAAGTAAAATGTATGTTGAGTTGTTAGGCAAGCAAATGCTTAAGCCATATTTACAGACCCAAGAATTAAAGTTGGTAAAGGAAGATGGACAGAGTCGATATGTGATTCTCGCCGATGAAGATTCTGTTTTAAATCAAGGTGTTTCAATTGTAACTAAGCAAAACATTGATGGGACTATATCTTTAACTGCTCTTAAAGATGAGGAACCAGATACAAGCACTTTAGAAGAGGATGCTGACAAAAACCAGGAAGAAATATACAGTTGTAATGCATGTGGAGTATCATTTTCATCAGTTTTGGAACACATACAAAATTATCACAATGATCAAGATGTTGTGGTTGAGGAGCCTCTTGAAGTAAATAGTATTCCAGTAGAATATGAAGAAGTTGCTAATGAAGAAGTATTAGAAGATAAGCAGCAGTCGAGACGGATGATAACTGAGACAGGAGATATTATTGAAACACCATTAACAGAAGATGAAGAAACAGTTCCGAACAAGCCAGTTAAGGTTGTTATACCAATAAAGACAGATTCAGTAGACAAACAGGGACGTGCGTGTACACGGCGATATGTACAGATAGACAAATTCTGTAACAGCATCATAAAAGACATCAAACCAGCTGATGATAAAAATGGTCCATTTCACAATGTGGTTGTGAAGGAAATGCAAACAACGTCCGGTAACAAAATGCGGGTGTACAATTGTATGTCGTGCAATGTTTACGTCTCTTCGCTGTCGGAATTCAAACTGCATCCATGTAAAATTTTGAAGTACCCTTGTCCACAATGTCCAGTCGCTTATGAAAACTCAAAATCATTATGTGCACACATGAAAGTTCATAAATCAAAAGGAGAAAATAATTATGTAGCCCCTGTGAAGTTCGAATGTGAAATTTGTACAACAACATTTCCTACCAGCAAGTCGTTAAAATTACACAAGAGGATGCACGACCCTATCAAATCTCGCCCAATAGAGCCTCCAGTGGATACCTCTGAAGGTAACATAGCAAGTAACAACAAGTTCCTATGTTCGATATGTGACAAGTTGATACCGATCGACTACCGGACCATACATCAGAACTCGCACAAGGGCAGCAATAAGATGAACTGCGACATATGCAACAAGAAGTTCCATTCTCAGGAATATTTGGATATGCATATGAGTGTACATAGTATAGATAAGGTAATAGTCGGCAAACAAGACAAGTCGCTTCCGTACACGTGTCTATATTGCAATAGGAAGTTTGCAAGACCCCACGAAAAGGTGAAGCATGAACGGATACACACAGGCGAGAAACCTCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTACACATGCGCACGCACACAGGCGCACGGCCCTACGCCTGTCCGCACTGCAACAAGAGATTCAAAGCGCACAGTGTGTACAATCACCACTTGTTAACACATTCAGAAGTGCGCGCGTACAAATGTCCGTACTGCCCCAAAGCGTTCAAGACGTCGGTCCAGCTCGCCGGCCACAAGAACTCGCACACTAAACCATTCTCTTGCCAGCAATGTAACAGACCGTTCGCGTCGTTGTACGCGGTGCGCGTGCACATGGAGATCCACTCGCGTCAGAACAGCCTGAAATTCTCGTGCTCCATGTGCGGAGCGAGCTACGCGCGGGCCTTCGCCCTCAAGGACCACATCAAACAAGTGCACAAGCAGGAAGTCGACTCGCCCGACCATCTCACGATACTTAAAGAAGAAGACTGTATGGTGCAAGAGAACGTAGACATCGACTCGGACGGAATGCACCTCAATAAAGATCTGCCACAGGAGATTAACGAATTGGATATACATACTAACGAACTGATCGTTCCTTAA
Protein Sequence: MGDLVLYCPLCCNATFDSKQSLIEHISIISSNLVCPLCTNRFSSIDQFTDHLKLDNCELVNEVQTIIFETNTQIESNDNSDDNSKLKLELNKNGNNLQKDDSQNQISEHTVKVSNGSDESKMYVELLGKQMLKPYLQTQELKLVKEDGQSRYVILADEDSVLNQGVSIVTKQNIDGTISLTALKDEEPDTSTLEEDADKNQEEIYSCNACGVSFSSVLEHIQNYHNDQDVVVEEPLEVNSIPVEYEEVANEEVLEDKQQSRRMITETGDIIETPLTEDEETVPNKPVKVVIPIKTDSVDKQGRACTRRYVQIDKFCNSIIKDIKPADDKNGPFHNVVVKEMQTTSGNKMRVYNCMSCNVYVSSLSEFKLHPCKILKYPCPQCPVAYENSKSLCAHMKVHKSKGENNYVAPVKFECEICTTTFPTSKSLKLHKRMHDPIKSRPIEPPVDTSEGNIASNNKFLCSICDKLIPIDYRTIHQNSHKGSNKMNCDICNKKFHSQEYLDMHMSVHSIDKVIVGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEIHSRQNSLKFSCSMCGASYARAFALKDHIKQVHKQEVDSPDHLTILKEEDCMVQENVDIDSDGMHLNKDLPQEINELDIHTNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00843748;
90% Identity: iTF_01078415;
80% Identity: -