Nrev028886.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nycteola revayana
Gene Symbol
clz9
Assembly
GCA_947037095.2
Location
OX344860.2:2241455-2244052[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4e-09 9.6e-07 29.4 0.0 1 35 14 48 14 56 0.91
2 2 6 1.4e+03 0.0 0.0 25 39 771 785 770 787 0.84

Sequence Information

Coding Sequence
ATGCCCCGTACCTACGTCCGTAAGAAAGTTAAACCATATACGCCAGAAGACTTAGCCGAGgcgttacaaaaaataaaaaatggagaACTTACCATAACCACTGCAGCAGAACAATACTCCATTCCAAAAGCGACTCTAAGTGAAAATATGCATTCTAAGTATTCCAGGCCAACTGCAGGTAGACCTACAATCTTTTCATCGGAAGAAGAAGAACGTTTAGCAGATGCcataaaaataatggaaaaatgGGGATTTGGATTGTCAAGAcaagaaattttagaaattgTCGCTGAATACGTAAAGGCAAATCAGATTAAAAcgccatttaaaaataacacgcCCGGTCCAGATTGGTTCATCAACTTCCGCAAACGTCACCGCCTCTCTATAAAGAAAGCACAGCCCGTGGAATATGTACGCAAAAAAATGACGGATCCATTTTTCATTTTCGAGTACTTCGAGTTGCTAGAAAAGACTTTGATAGAGTTGGATCTTATTGACAAACCTCAAAACGTCTGGAATCTAGATGAAACGTCTCTGTGTCTGGACCCTACTAGAACAAAAGTAGTGGGAGCCATCAATAAACCCTGTGCAAGAACCACTTACGGTTCTGGCAAGGAAAATATAACAGTATTGGCAGGTGCAAATGCTGCAGGCAAGAAATTACCACCTTTAATTGTGTTTAAAGGAAAATATGTTTGGGATCAGTGGATGGCTGCAACAGATGATTACGACTTCGAGTTATCGTATGCTGCAAGTCCTAAGGGGTGGATGCAGACCGACATTTTCTATAACTACATGAAAACGATTCTCATTCCAAGTGTAGGTCAGGAGAGACCAGTCTTGTTAGTGTATGATGGCCACTCTACCCATGTCGATGAAAAAGTTATAgaattggcaattgaaaatggCATAACCATTCTCAAGCTCCCACCACATACATCTCATTTGCTTCAACCGCTTGATATAGCAGTTTTCAAATCCTTTAAGAGCAAGTGGGATGCCAAACTAGTCGACTGGCAGCGTCGAAACATTGGCACTAAAATGGCGAAAAACATATTCTCGAAAACACTTGCTGATACATGGCAAGAAACCGCACCCGACATCATTAAAAATGGGTTTAAAAAAGCTGGAATTTTTCCGTTTGATGCCAGTGTTATACCTGTGGAAAAGTACGATCCAAATGCCTATAGAAGGTACCAGTTAATAAGAGAAGAGCGTTTGCTCCAAAGTCAACAAAATACAAGTAGTCCGGAATCATTGAAAAAAATTTGTATCGATTATTTTAATGAACAGAATAACATACCTGACGCAACTCTTCACAAACAGTGCCCACCGGACCAACAAAACGACACTCTTGGGGAACCGAAGTCTATAAACCACCAATTTACTAATATTCCAACTGAAAATGTAAACTTATTATCTCAAATTTCAAAATCTGATAGCCAGATGACGGTTTTTTTAGCTGAAGATTCAACCTCTATGCCAACATGTTTAAAAGAAGGTCGTTCTGATCCGAAAAACAACGAAACAGTTAAAAAtcctaatttaattataacatctTACATTGTCATCAAAAAATCCTCCATAACTTTAAATGCAGCGCCACAAACACCTCTTTCACCAGCATCTCCAAGAATCTTCACATTTGAAGAAGCTTTTCTGAAAAAGATACAACAGGAAAAGAAAAACAATGatactgtgataaaaaaaaaacgtatctcAAAAGGTGCCGAAGTGATAACCAAGTCTATGAGTAAGAAACAAGAATCTAAAGACGAAGATAAAGTAACTAAGAAAAGTATGAAGAAGCAAGATAACAAGGATAGTCAGAGCAAAAattctaaaacaaaatttaaacaaaacttgGATAAAAATCGACCGGGTACCTCAGGCCTTCAAAAAAGTACGAAGCGAAAGCGCGTCCCTTCAATGGATTCCACAACAAGTATATCGGATATAATGAGCGTGTATAGTGACTCAGAACTACTTGATTTTGATGACTTTGAAGAATTTCATGTATTTAAAGAAGATTTTACCCCACTAAATATAGACAATAAACGAAGAAACGAAGAATcacataatattagtttaagaaAGGGAAAAGGTAAAGGCAAAAAAAGTATTGAATGTAAAGAAAACCAAACCAAAGATGAAGAAAATGAAAGTGACAGCTGTATGAGTGGaagtcataaaaaaatcttgaagaGTGCTAAAAAAAGAGGAAAAGGCGAACGCTATCAAGACAGTGACATAAAAGAGGATAGTAGTGATAGTAACGAAAATTACAACAACAATGAAAggaatgacatttttaatataaacgaCACGGTCCTAGTAAGATATTTTATGAGGAACAAATGGGTTCACTATATAGGGTTTATCGAGAAAATTGACCAGCTGGATGTAGAAACTTACTTCACTATTGATTTCTTAAAAACTGTAAAGAAACCACCCCTAATATTTGTAAAACCAAAAAGAAAGGATTGTGACGTAGTTCCGAAGGCATCaatcgtaaaaataataaaaattgaattaaaaaatgataataaaaaagaatattatttgtgtaatgACGTTGACGCTGTGTTTTTTTAA
Protein Sequence
MPRTYVRKKVKPYTPEDLAEALQKIKNGELTITTAAEQYSIPKATLSENMHSKYSRPTAGRPTIFSSEEEERLADAIKIMEKWGFGLSRQEILEIVAEYVKANQIKTPFKNNTPGPDWFINFRKRHRLSIKKAQPVEYVRKKMTDPFFIFEYFELLEKTLIELDLIDKPQNVWNLDETSLCLDPTRTKVVGAINKPCARTTYGSGKENITVLAGANAAGKKLPPLIVFKGKYVWDQWMAATDDYDFELSYAASPKGWMQTDIFYNYMKTILIPSVGQERPVLLVYDGHSTHVDEKVIELAIENGITILKLPPHTSHLLQPLDIAVFKSFKSKWDAKLVDWQRRNIGTKMAKNIFSKTLADTWQETAPDIIKNGFKKAGIFPFDASVIPVEKYDPNAYRRYQLIREERLLQSQQNTSSPESLKKICIDYFNEQNNIPDATLHKQCPPDQQNDTLGEPKSINHQFTNIPTENVNLLSQISKSDSQMTVFLAEDSTSMPTCLKEGRSDPKNNETVKNPNLIITSYIVIKKSSITLNAAPQTPLSPASPRIFTFEEAFLKKIQQEKKNNDTVIKKKRISKGAEVITKSMSKKQESKDEDKVTKKSMKKQDNKDSQSKNSKTKFKQNLDKNRPGTSGLQKSTKRKRVPSMDSTTSISDIMSVYSDSELLDFDDFEEFHVFKEDFTPLNIDNKRRNEESHNISLRKGKGKGKKSIECKENQTKDEENESDSCMSGSHKKILKSAKKRGKGERYQDSDIKEDSSDSNENYNNNERNDIFNINDTVLVRYFMRNKWVHYIGFIEKIDQLDVETYFTIDFLKTVKKPPLIFVKPKRKDCDVVPKASIVKIIKIELKNDNKKEYYLCNDVDAVFF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01178401; iTF_01178404; iTF_01178405; iTF_01178406; iTF_01178407; iTF_01178408; iTF_01178409; iTF_01178410; iTF_01178411; iTF_01178412; iTF_01178413; iTF_01178414; iTF_00906051; iTF_00705932; iTF_01076364; iTF_01178445; iTF_00034643;
90% Identity
iTF_01076364;
80% Identity
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