Nrev029477.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344860.2:12252521-12254392[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-12 1e-09 38.9 0.0 2 42 13 53 12 55 0.94
Sequence Information
- Coding Sequence
- atGTCGtcgaataaaagaaaatactttgCATGGAATGAAACAAGTATGAACCTTGCTTTAGAATCAGTAAGGAAACAAAAAACTGGTTTAAACGAAGCAAGCAGAATATACGGAGTCCCAAAAGCAACACTTAAACGAAGGTTAGATGGAATAAACCAAAAAACCAAAGAACACGTCCAAATACCGGGTTCGGAAAGTGACCTCCCTCTAGAATTAGAAAATGAACTGTGTAAACACGTTCTGGAGATGGAAGATTGCTTATACGGCATTACTCCTACAGACATAAGACGACTGGCATTTGAGTTAGCggagaaaaataatttaaaacaccgTTTCAACAAAGTTAAACAATCCGCGGGCAAAAAATGGTACTATGCATTTATGAAGCGCCATCCTAATTTAAGTTTGAGACAGCCCAGAGCTACTTCCATGAGCAGGGCTACTGGATTTAATAAGCCAGctgttaatgatttttttaataagttagaGGCAGTCATGGACAAGCATGACATAAAAGATGCTCAGCGGATATACAATATGGATGAGACGGGCTTGTCAACCGTGCAGAAAAAGACAAGAAAAGTGCTGGCGTTAAAAGGCAAGCGCCAAGTTGGAGCCATCACTAGTGGAGAACGTGGTATAACAACAACAGCCGTATGTTGCGCTAATGCTGCTGGAAATTTTGTGCCACCGCTCGTAATTTTCAAGCGCAAGCGGGCCAAAGACGAATTAAGGGACGGGGCACCACCTGGCACCATATTTGCTTTTAATCCAGACAGTGgatacataaataaagaaatatttactgTGTGGTTGCAACACTTTGTTGAGACTGTGAAACGAACACCAGAAAAAAAGGTTTTGCTATTGATGGATGGCCACGCAAGCCATACTAAAAATCTAGAGGCTATAAATTATGCAAGAAGACATGGCGTAGTTATGTTTTCGTTTCCAGCACACACAACGCACCGGCTGCAACCCCTTGATGTATCATTCTTCAAGCCGCTGAGCCTTTACTACATAGACGAAACCGAAAAATGGCTTCGCCTAAATCCTGGAAGAACGGTGACTGTTTTCCAGGTGTCTATGCTCTTCGGAAAGGCCTATTTTCGAGCTGCTTCTGTAGGTACGGTTGCGAATGGGTTTATGAAAACAGGCATTCATCCTCTCAATAAAGATGTGTTTGCTGACTACGAATTTATTGAAGTAGGTGAACAAGAAAACGAGCAAGATTCTTTTGCAACCGCTGTGTTGCAAATCCAAGATCCGATAGATCCATTGTCTGTGAATCCATCATCACAAGATGGTGTCGGAGAAACAATCGTAGATGAACCAAATTCCTATGCAGAGCCACCTTTACCCGCAGCATCAATGCTAGCAAGACCGACTGATGATGCCTCACCTACAGATGCAGAGGCAAACAACATAAGTGTTGGATCTCCACCTGCAATGTCAATTCCAGGACGAGAAGAAAATGTCCGAACACCTACAGCGCGGCGTGAATCTTCCAGCTTTGAATTCCATATTCAACATATATCTCCTGGAGCCAGGAAGATAGCACAGGAATTACGGAAAAGAAGTCGGAGAGCACAAAGGAGCATAGAATTGACTTCGTCGCCGTACAAAACTGCCCTAGATGAGAACGCAAAGGTTCCAAAGCAGAAGAAGCCAAAACTGTCCAGAAAAGAATCTCAACCGTCAACCAGTAAAGAAGTTAATGAGAATGTAGAACAATGGTTTTGCAAAATCTGTCTAAAATGTGAAATAGAAGACATGATCCAATGCATGATCTGTAAAGCCTGGGTACATGTTGATTGTGCTTGTGTTAAAAAACACGCCAAAAAGTACCTGTGCCCTCATTGCACAACATAG
- Protein Sequence
- MSSNKRKYFAWNETSMNLALESVRKQKTGLNEASRIYGVPKATLKRRLDGINQKTKEHVQIPGSESDLPLELENELCKHVLEMEDCLYGITPTDIRRLAFELAEKNNLKHRFNKVKQSAGKKWYYAFMKRHPNLSLRQPRATSMSRATGFNKPAVNDFFNKLEAVMDKHDIKDAQRIYNMDETGLSTVQKKTRKVLALKGKRQVGAITSGERGITTTAVCCANAAGNFVPPLVIFKRKRAKDELRDGAPPGTIFAFNPDSGYINKEIFTVWLQHFVETVKRTPEKKVLLLMDGHASHTKNLEAINYARRHGVVMFSFPAHTTHRLQPLDVSFFKPLSLYYIDETEKWLRLNPGRTVTVFQVSMLFGKAYFRAASVGTVANGFMKTGIHPLNKDVFADYEFIEVGEQENEQDSFATAVLQIQDPIDPLSVNPSSQDGVGETIVDEPNSYAEPPLPAASMLARPTDDASPTDAEANNISVGSPPAMSIPGREENVRTPTARRESSSFEFHIQHISPGARKIAQELRKRSRRAQRSIELTSSPYKTALDENAKVPKQKKPKLSRKESQPSTSKEVNENVEQWFCKICLKCEIEDMIQCMICKAWVHVDCACVKKHAKKYLCPHCTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172260; iTF_01172261; iTF_01172262; iTF_01172263; iTF_01172264; iTF_01172266; iTF_00831109; iTF_00831110; iTF_00831116; iTF_00928592; iTF_00928593; iTF_00928595; iTF_00928596; iTF_00928597; iTF_00928598; iTF_00928599; iTF_01527009; iTF_01527010; iTF_01440934; iTF_00172680; iTF_01440936; iTF_01440935; iTF_00172681; iTF_01440937; iTF_00172682; iTF_00172683; iTF_00172684; iTF_00172685; iTF_00172686; iTF_00172687; iTF_00172688; iTF_01440938; iTF_00172689; iTF_00928594; iTF_00037719; iTF_00809992; iTF_00302027; iTF_00826802; iTF_00826803; iTF_00825560; iTF_00701883; iTF_00122301; iTF_00122300;
- 90% Identity
- -
- 80% Identity
- -