Lpor001249.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465383.1:23813632-23815497[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-11 1.9e-08 34.6 0.0 2 39 13 50 12 55 0.92
Sequence Information
- Coding Sequence
- ATGTCGCTAAACAAAAGGAAGTACTTCGCATGGAATGAAACGAGTATGAACCTTGCCTTAGAATCAGTAAGGAAACAACGAGTGGGCTTAAATGAAGCAAGCAGAATATACGGAGTCCCGAAAGCGACACTAAAACGGAGGTTAGATGGTGTAAACCAAAAGGCCAAAGAACACGTCCAAATACCAGGTTCCGAAAGTGACCTCCCTCCAGAATTAGAAGCTGAGCTGTGTAAACACGTGCTTGAGATGGAAGGTTGCTTGTATGGCATTACTCCTACAGATATTAGACGACTGGCATTTGAGTTAgcggagaaaaataaaataaagcatcgttttaacaaaaataaacaatctgcGGGAAAAAAATGGTACTACGCGTTTATGAAGCGGCATCCCAATTTAAGTTTACGACAACCAAGAGCAACATCCATGAGCAGGGCTACAGGATTCAATAAGCCAGCTGttgacgatttttttaacaaattagaaGCAGTCTTAGACAAACATGACATAAAAGATGCGCAGCGGATATATAATATGGATGAGACAGGCTTGTCAACTGTGCAGAAAAAGACTAGAAAAGTGCTGGCGTTAAAAGGTAAACGCCAAGTTGGAGCCATCACTAGTGGAGAACGTGGTGTAACAACAACAGCCGTATGTTGCGCTAATGCTGCTGGAAATTTCGTACCGCCACTCATAATTTTCAAACGCAAACGCGCTAAAGATGAACTGAGGGATGGGGCACCACCTGGCACCATATTTGCTTTCAATCCAGACAGTGGATATATAAACAAAGAGATTTTTAATCTGTGGTTGCAACATTTTGTTGAGACTGTGAAGCCAACACCAGATAAAAAGGTTTTGCTTCTGATGGATGGCCATGCAAGCCATACTAAAAACCTAGAGGCTATAAATTATGCAAGAAGACATGGCGTAGTTATGTTTTCGTTTCCAGCTCACACAATGCACCGGCTGCAACCCCTTGATGTGTCATTCTTCAAACCGTTGAGTCTTTATTACATAGACGAAACTGAAAAATTGCTCCGGCTAAATCCTGGAAGAACTGTGACTGTTTTCCAAGTGTCTATGCTCTTCGGAAAAGCCTATTTTCGAGCTGCTTCCGTAGGCACGGCTGCGAATGGATTTCTGAAAACAGGCATTTACCCTCTCAACAAAGATGTGTTTGCAGACTATGAATTTATAGAAGCAGCCGAACAAGAAAACGCAGAAGATTATTTTGGAACGGTGTTGCATGTCCAAGACCCGATAGACCCATTGTCTGTAAATGCATCATCACAAGAAGAATCTATAGACCCAATCATAGAAGAACCAATGCCCCATGCAGAGCCGCTACCTACAGCATCAATGCTAGCAAAACCGACTGATTACTCACCTAGAGATGCAGAGGTGAGCAACGTAAATGTTGGATCTCCAGCTGCAGCACCAATTCAAATAAGTCGAAGTGACAATGTCCAAACGCCTATAGTGGAGAGTAATTCTACCAACTTTGAATTCCACATTCCTCAAATATCTCCTGGAGCCAAGAAGATAGCACAGGAATTACGAAAAAGAAGTCGAAAAGCCCAAAGTAGCATAGAATTGACTTCGTCGCCGTACAAAACTGCCCTAGATGAGAATGCAAAGGTTCCAAAGCAGAAGAAGCCAAAACTGTCTACAAAAGAACCTCAACCATCAACCAGTAAGCAAGCTAACGAGAATATAGAAAAATGGTTTTGCAAAATCTGCTTAAAATGTGAAATAGAAGACATGATTCAATGTATGATCTGTAAAGCCTGGGTACATGTTGATTGTGCTTGTGTTAAGAAACATATCAAAAAGTATCTGTGCCCTCATTGCACATCATAG
- Protein Sequence
- MSLNKRKYFAWNETSMNLALESVRKQRVGLNEASRIYGVPKATLKRRLDGVNQKAKEHVQIPGSESDLPPELEAELCKHVLEMEGCLYGITPTDIRRLAFELAEKNKIKHRFNKNKQSAGKKWYYAFMKRHPNLSLRQPRATSMSRATGFNKPAVDDFFNKLEAVLDKHDIKDAQRIYNMDETGLSTVQKKTRKVLALKGKRQVGAITSGERGVTTTAVCCANAAGNFVPPLIIFKRKRAKDELRDGAPPGTIFAFNPDSGYINKEIFNLWLQHFVETVKPTPDKKVLLLMDGHASHTKNLEAINYARRHGVVMFSFPAHTMHRLQPLDVSFFKPLSLYYIDETEKLLRLNPGRTVTVFQVSMLFGKAYFRAASVGTAANGFLKTGIYPLNKDVFADYEFIEAAEQENAEDYFGTVLHVQDPIDPLSVNASSQEESIDPIIEEPMPHAEPLPTASMLAKPTDYSPRDAEVSNVNVGSPAAAPIQISRSDNVQTPIVESNSTNFEFHIPQISPGAKKIAQELRKRSRKAQSSIELTSSPYKTALDENAKVPKQKKPKLSTKEPQPSTSKQANENIEKWFCKICLKCEIEDMIQCMICKAWVHVDCACVKKHIKKYLCPHCTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076327;
- 90% Identity
- iTF_00122301;
- 80% Identity
- -