Acre009582.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451356.1:6282590-6284473[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-11 2.3e-08 34.6 0.0 2 39 13 50 12 55 0.92
Sequence Information
- Coding Sequence
- ATGTCgccgaaaaaaaggaagtactTTGCATGGAATGAAACAAGTATGAACCTTGCTTTAGAATCAGTAAGGAAACAAAGAGTTGGTTTAAATGAAGCAAGCAGAATATATGGAGTCCCGAAAGCAACACTGAAACGAAGGTTAGATGGAGTAAACCAAAAGGCCAAAGAACACGTCCAAATACCGGGTTCCGAAAGTGATCTGCCTCCAGAGTTAGAATATGAGCTGTGTAAACACGTTCTTGAGATGGAAGGTTGCTTGTACGGCATTACTCCTACAGATATTAGACGACTGGCATTTGAGTTAGcggagaaaaataaaataaaacatcgttTTAACAAAGATAAGCAATCTGCGGGAATAAAATGGTACTATGCGTTTATGAAGCGGCATCCTAATTTAAGTTTGCGACAACCTAGAGCTACTTCCATGAGCAGGGCTACTGGATTTAATAAGCCAGCTGTTGATGATTTTTTCAATAAGTTAGAGGCAGTCATAGACAAACATGATATAAAAGATGCGCAGCGGATATATAACATGGATGAGACGGGCTTGTCAACCGTGCAGAAGAAGACAAGAAAAGTGCTGGCGTTAAAAGGTAAGCGCCAAGTTGGAGCCATCACTAGTGGAGAACGTGGTGTAACAACAACAGCCGTATGTTGCGCTAATGCTGCTGGAAATTTTGTGCCACCACTCATAATTTTCAAGCGCAAGCGGGCCAAAGATGAACTGAGGGATGGGGCACCACCTGGCACCATATTTGCTTTTAATCCAGACAGTGGATACATTAACAaagagatatttaatctgtggtTGCAACACTTTGTTGAGACTGTGAAACCAACACCAGAAAAAAAGGTTTTGCTCCTGATGGACGGCCACGCAAGCCATACTAAAAACCTAGAGGCTATAAATTATGCAAGAAGACATGGCGTAGTTATGTTTTCGTTTCCAGCACACACAACGCACCGGCTGCAACCCCTTGATGTGTCATTCTTCAAGCCGTTGAGCCTTTACTACATAGACGAAACAGAAAAATGGCTGCGCCTAAATCCTGGAAGAACCGTGACTGTTTTCCAAGTGTCTATGCTCTTCGGAAAGGCCTATTTTCGAGCTGCTTCTGTAGGTACGGCTGCGAATGGATTTCTGAAAACAGGCATTCATCCTCTCAATAAAGATGTGTTTGCTGACTACGAATTTATTGAAGCAGTTGAACAAGAAAACGAACAAGAAAACGAAGAAGATTCTTTTGGAACCGTGTTGCAAGTCCAAGATCCGATAGACCCATTGTCTGTGAATGCATCATCGCAAGATAGTTCTATAGAAACAATTGTAGAAGAACCAATGTCCGATGCAGAGCCGCCTTTACCTGCAGCATCAATGCTAACAAGACAGACTGATAATGCCTCACCTACAGATGTACAGGCAAGCAACATAAATGTTGGATCTCCATCTGCAGCGCCAATTCAAGTAAGACGAAGTGAAAATGTCCGAACACCTATAGTGGGGAGTAGCTTTGAATTCCATATTCCACAGATATCTCCTGGAGCCAAGAAGATAGCACAGGAATTACGGAAAAGGAGTCGGAAAGCTCAAAGCAGCATAGAATTGACTTCGTCGCCGTACAAAACTGTCCTAGATGAGAAGTTTGAGAACGCAAAGGTTCCAAAGCAGAAGAAGCCAAAACTGTCCACAAAAGAACCTCAACCATCAACCAGTAAACAAGCTAATGAGAATATAGAAAAATGGTTTTGCAAAATTTGCCTAAAATGTGAAATAGAAGACATGATTCAATGCATGATCTGTAAAGCCTGGGTACATGTTGATTGTGCTTGTGTTAAGAAACATGTCAAAAAGTACCTGTGCCCTCATTGCACAACATAG
- Protein Sequence
- MSPKKRKYFAWNETSMNLALESVRKQRVGLNEASRIYGVPKATLKRRLDGVNQKAKEHVQIPGSESDLPPELEYELCKHVLEMEGCLYGITPTDIRRLAFELAEKNKIKHRFNKDKQSAGIKWYYAFMKRHPNLSLRQPRATSMSRATGFNKPAVDDFFNKLEAVIDKHDIKDAQRIYNMDETGLSTVQKKTRKVLALKGKRQVGAITSGERGVTTTAVCCANAAGNFVPPLIIFKRKRAKDELRDGAPPGTIFAFNPDSGYINKEIFNLWLQHFVETVKPTPEKKVLLLMDGHASHTKNLEAINYARRHGVVMFSFPAHTTHRLQPLDVSFFKPLSLYYIDETEKWLRLNPGRTVTVFQVSMLFGKAYFRAASVGTAANGFLKTGIHPLNKDVFADYEFIEAVEQENEQENEEDSFGTVLQVQDPIDPLSVNASSQDSSIETIVEEPMSDAEPPLPAASMLTRQTDNASPTDVQASNINVGSPSAAPIQVRRSENVRTPIVGSSFEFHIPQISPGAKKIAQELRKRSRKAQSSIELTSSPYKTVLDEKFENAKVPKQKKPKLSTKEPQPSTSKQANENIEKWFCKICLKCEIEDMIQCMICKAWVHVDCACVKKHVKKYLCPHCTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076327;
- 90% Identity
- iTF_00122300; iTF_00831110; iTF_00831109; iTF_00831116; iTF_00928592; iTF_00928593; iTF_00928595; iTF_00928596; iTF_00928597; iTF_00928598; iTF_00928599; iTF_00928594; iTF_00825560; iTF_00826802; iTF_00826803; iTF_01172260; iTF_01172261; iTF_01172262; iTF_01172263; iTF_01172264; iTF_01172266; iTF_00809992;
- 80% Identity
- -